TCONS_00040558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040558
Unique NameTCONS_00040558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040558 ID=TCONS_00040558|Name=TCONS_00040558|organism=Clytia hemisphaerica|type=transcript|length=235bp
TTATCTCCAGCCAAATTTACCGCAAACGGGTCCTCTTTTTGTCAGATCTA
ATGGTCAATTTTTTACACGTCGTCAACTAGTTACCCTTTTGAATTTGACC
CTTCCCAATGTACCCGACATCAATACTCACAGTTTTCGAATTGGTGGAGC
CTCTGCTGCGCTGTCATCGGGTGCTTCTGACTCAATGATCCGCTCACTAG
GACGCTGGACCAGCGACTGTTATTTACGTTATCTT
Run BLAST on NCBI

transcript from alignment at sc0002469:19111..19345

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040558 ID=TCONS_00040558|Name=TCONS_00040558|organism=Clytia hemisphaerica|type=transcript|length=235bp|location=Sequence derived from alignment at sc0002469:19111..19345 (Clytia hemisphaerica)
AAGATAACGTAAATAACAGTCGCTGGTCCAGCGTCCTAGTGAGCGGATCA
TTGAGTCAGAAGCACCCGATGACAGCGCAGCAGAGGCTCCACCAATTCGA
AAACTGTGAGTATTGATGTCGGGTACATTGGGAAGGGTCAAATTCAAAAG
GGTAACTAGTTGACGACGTGTAAAAAATTGACCATTAGATCTGACAAAAA
GAGGACCCGTTTGCGGTAAATTTGGCTGGAGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024681XLOC_024681Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040558-exon-sc0002469-1491911889:19111..19345TCONS_00040558-exon-sc0002469-1491911889:19111..19345Clytia hemisphaericaexon
TCONS_00040558-exon-sc0002469-1510915933:19111..19345TCONS_00040558-exon-sc0002469-1510915933:19111..19345Clytia hemisphaericaexon
TCONS_00040558-exon-sc0002469-1575043694:19111..19345TCONS_00040558-exon-sc0002469-1575043694:19111..19345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002469supercontigsc0002469:19111..19345 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.974822	0	1.10374	3.23952	39.4381	38.4362	37.5986	59.839	16.4822	18.9466	7.96986	6.1401	21.454	18.4164	17.8793	27.1605	20.7212	29.2927	18.5891	19.5718	9.87193	17.9175	9.14022	7.59949	37.6785	42.968	28.9341	15.0322	19.6459	9.3687
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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