TCONS_00040556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040556
Unique NameTCONS_00040556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040556 ID=TCONS_00040556|Name=TCONS_00040556|organism=Clytia hemisphaerica|type=transcript|length=248bp
tctaattttaaattttagattttttaaaaacaaaaaaaaacaataatggA
ATCGTTCGTTATGCGTGATGCTGTTTCGAATGATTGTGATGACATCATGA
AATTGATCGTCAATTTAGCTGTCTTTGAAAATGAGCCTGAATCACgtgtc
aaaataacaaaagaagaaTTGATACGTGATGGTTTCAGTGAAAAGAAATG
GTTTCGTTGTCTTATTGGTGAGGTCATCAGCACTGGTGAATCAGGTAA
Run BLAST on NCBI

transcript from alignment at sc0002468:17456..17703

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040556 ID=TCONS_00040556|Name=TCONS_00040556|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at sc0002468:17456..17703 (Clytia hemisphaerica)
TTACCTGATTCACCAGTGCTGATGACCTCACCAATAAGACAACGAAACCA
TTTCTTTTCACTGAAACCATCACGTATCAAttcttcttttgttattttga
cacGTGATTCAGGCTCATTTTCAAAGACAGCTAAATTGACGATCAATTTC
ATGATGTCATCACAATCATTCGAAACAGCATCACGCATAACGAACGATTc
cattattgtttttttttgtttttaaaaaatctaaaatttaaaattaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024679XLOC_024679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040556-exon-sc0002468-1491911889:17456..17703TCONS_00040556-exon-sc0002468-1491911889:17456..17703Clytia hemisphaericaexon
TCONS_00040556-exon-sc0002468-1510915933:17456..17703TCONS_00040556-exon-sc0002468-1510915933:17456..17703Clytia hemisphaericaexon
TCONS_00040556-exon-sc0002468-1575043694:17456..17703TCONS_00040556-exon-sc0002468-1575043694:17456..17703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002468supercontigsc0002468:17456..17703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.21378	1.5433	4.90915	5.26445	0	0	0	0	7.33502	6.60771	2.84469	7.73863	1.57882	3.27924	4.94264	1.9288	8.91047	7.91522	2.52353	1.29476	6.88573	8.95631	5.10606	13.1978	0	0	3.25512	0	1.75658	0.894838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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