TCONS_00040553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040553
Unique NameTCONS_00040553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040553 ID=TCONS_00040553|Name=TCONS_00040553|organism=Clytia hemisphaerica|type=transcript|length=318bp
TTCCTAGTTTACATAGGTACCAATCAAAAATTACtgctttatttataaac
aaaaaaataatctgtaAGATCCTAGTGTACAGCTATGTCATCCTTATTTA
GCTGAATTTCTATGAATGCTTCACCATTACCAATAAAAACACTCTTATGA
AATAGTGTTCAAACCCAGTCTTGTGTTTCATATCTGGCAGGTGTTCCTTC
TTCTGCTTCTTTGATACTtactttttgatactttttgaaggcttctttgt
tcgtctcaacaatcatccaatttgagaAATCCGATGATGGACCATGACTT
TGATGCTATTTGAATCAG
Run BLAST on NCBI

transcript from alignment at sc0002467:19857..20174

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040553 ID=TCONS_00040553|Name=TCONS_00040553|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at sc0002467:19857..20174 (Clytia hemisphaerica)
CTGATTCAAATAGCATCAAAGTCATGGTCCATCATCGGATTtctcaaatt
ggatgattgttgagacgaacaaagaagccttcaaaaagtatcaaaaagta
AGTATCAAAGAAGCAGAAGAAGGAACACCTGCCAGATATGAAACACAAGA
CTGGGTTTGAACACTATTTCATAAGAGTGTTTTTATTGGTAATGGTGAAG
CATTCATAGAAATTCAGCTAAATAAGGATGACATAGCTGTACACTAGGAT
CTtacagattatttttttgtttataaataaagcaGTAATTTTTGATTGGT
ACCTATGTAAACTAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024676XLOC_024676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040553-exon-sc0002467-1491911889:19857..20174TCONS_00040553-exon-sc0002467-1491911889:19857..20174Clytia hemisphaericaexon
TCONS_00040553-exon-sc0002467-1510915933:19857..20174TCONS_00040553-exon-sc0002467-1510915933:19857..20174Clytia hemisphaericaexon
TCONS_00040553-exon-sc0002467-1575043694:19857..20174TCONS_00040553-exon-sc0002467-1575043694:19857..20174Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002467supercontigsc0002467:19857..20174 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06174	1.8671	4.87069	3.18787	2.17846	2.33649	4.84497	3.26655	3.80467	3.52073	3.98374	3.04714	4.95099	2.01709	1.80572	1.24106	1.45177	1.91697	1.30318	0.987004	3.67642	2.16981	1.1693	1.12043	2.23187	6.1879	0.83714	0	6.34951	3.92022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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