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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040543 ID=TCONS_00040543|Name=TCONS_00040543|organism=Clytia hemisphaerica|type=transcript|length=1516bpRun BLAST on NCBI transcript from alignment at sc0002461:1..11772- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040543 ID=TCONS_00040543|Name=TCONS_00040543|organism=Clytia hemisphaerica|type=transcript|length=11772bp|location=Sequence derived from alignment at sc0002461:1..11772- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00040543 vs. Swiss-Prot (Human)
Match: SESN1 (Sestrin-1 OS=Homo sapiens GN=SESN1 PE=1 SV=2) HSP 1 Score: 301.212 bits (770), Expect = 2.624e-95 Identity = 171/420 (40.71%), Postives = 254/420 (60.48%), Query Frame = 3
Query: 279 ENQGVRIPRRRLVGPSAFIPENECVAVDTDDVEKQSLFADAFIMNGRLSHIHQILGYHVKYLSQFLSFESKLLHQNGPLQQSWIYYIGIIGAARHQCSLLVEECERKFMLCDGDPDWLDSIENIPXXXXXXXXXXXXXAHQPWLINVDVLKDFFTGPAEETWSMSELLHAILVLLHFQTLSGFIFGCGINPEIDSRKGHTKRSPSSGEY----TSGGSEPITPTKIGRVKAGSFVDDS--STQQLFEKMLKVQE--EYELSSQDGEDDGTDDEKLRQFKEVAETNEHEMEEFDTPQNRFNQYLDDKQFHYKEYAKREKKDTEVFRAHDYNWQEHCFAFVNRLYPNIGPYLDGKFNCSFDLTYNSMGGNYTDVDTSKFRLATWNYIHLIYGIFHDDYLYVEVNKLLEKPYKSYIKKVACFP 1514
E G+RIPR GPS FIPE E + V ++D + +LFAD+F GRL +I ++ +H +YL FL + LL +GPL + +YIGI+ AARHQCS LV F+ GDP WL+ +EN P KL+ L LNK+LAH+PWLI + ++ E +WS++EL+HA+++L H+ +L+ F FGCGI+PEI GHT R PS Y + G+ + + + S V DS + L EKM ++QE + E +SQ+ + EK R+ V +++ E+ TP +++ +D + YK+++ R FR DY W++H ++ VNRLYP++G +D KF+ +++LTYN+M + DVDTS R A WNYIH ++GI +DDY Y E+N+LL++ +K YIK V C P
Sbjct: 34 EELGIRIPRPLGQGPSRFIPEKEILQVGSEDAQMHALFADSFAALGRLDNITLVMVFHPQYLESFLKTQHYLLQMDGPLPLHYRHYIGIMAAARHQCSYLVNLHVNDFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKA-EEHSWSLAELVHAVVLLTHYHSLASFTFGCGISPEIHCDGGHTFRPPSVSNYCICDITNGNHSVDEMPVNSAENVS-VSDSFFEVEALMEKMRQLQECRDEEEASQEEMASRFEIEK-RESMFVFSSDDEEV----TPARAVSRHFEDTSYGYKDFS-RHGMHVPTFRVQDYCWEDHGYSLVNRLYPDVGQLIDEKFHIAYNLTYNTM-AMHKDVDTSMLRRAIWNYIHCMFGIRYDDYDYGEINQLLDRSFKVYIKTVVCTP 444 The following BLAST results are available for this feature:
BLAST of TCONS_00040543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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