|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040542 ID=TCONS_00040542|Name=TCONS_00040542|organism=Clytia hemisphaerica|type=transcript|length=1519bpRun BLAST on NCBI protein sequence of TCONS_00040542-protein >TCONS_00040542-protein ID=TCONS_00040542-protein|Name=TCONS_00040542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=505bp VNCVVCREMQENSQLHLFFATLQTKDASQRRNYLDEIEKEFDDADPVNDNRun BLAST on NCBI transcript from alignment at sc0002461:1..11772- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00040542 ID=TCONS_00040542|Name=TCONS_00040542|organism=Clytia hemisphaerica|type=transcript|length=11772bp|location=Sequence derived from alignment at sc0002461:1..11772- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002461:1..11772- >TCONS_00040542 ID=TCONS_00040542|Name=TCONS_00040542|organism=Clytia hemisphaerica|type=CDS|length=16665bp|location=Sequence derived from alignment at sc0002461:1..11772- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00040542 vs. Swiss-Prot (Human)
Match: SESN1 (Sestrin-1 OS=Homo sapiens GN=SESN1 PE=1 SV=2) HSP 1 Score: 300.442 bits (768), Expect = 5.008e-95 Identity = 170/421 (40.38%), Postives = 250/421 (59.38%), Query Frame = 3
Query: 279 ENQGVRIPRRRLVGPSAFIPENECVAVDTDDVEKQSLFADAFIMNGRLSHIHQILGYHVKYLSQFLSFESKLLHQNGPLQQSWIYYIGIIGAARHQCSLLVEECERKFMLCDGDPDWLDSIENIPXXXXXXXXXXXXXAHQPWLINVDVLKDFFTGPAEETWSMSELLHAILVLLHFQTLSGFIFGCGINPEIDSRKGHTKRSPSSGEY----TSGGSEPITPTKIGRVKAGSFVDDS--STQQLFEKMLKVQE--EYELSSQDGEDDGTDDEKLRQFKEVAETNEEHEMEEFDTPQNRFNQYLDDKQFHYKEYAKREKKDTEVFRAHDYNWQEHCFAFVNRLYPNIGPYLDGKFNCSFDLTYNSMGGNYTDVDTSKFRLATWNYIHLIYGIFHDDYLYVEVNKLLEKPYKSYIKKVACFP 1517
E G+RIPR GPS FIPE E + V ++D + +LFAD+F GRL +I ++ +H +YL FL + LL +GPL + +YIGI+ AARHQCS LV F+ GDP WL+ +EN P KL+ L LNK+LAH+PWLI + ++ E +WS++EL+HA+++L H+ +L+ F FGCGI+PEI GHT R PS Y + G+ + + + S V DS + L EKM ++QE + E +SQ+ + EK + +EE TP +++ +D + YK+++ R FR DY W++H ++ VNRLYP++G +D KF+ +++LTYN+M + DVDTS R A WNYIH ++GI +DDY Y E+N+LL++ +K YIK V C P
Sbjct: 34 EELGIRIPRPLGQGPSRFIPEKEILQVGSEDAQMHALFADSFAALGRLDNITLVMVFHPQYLESFLKTQHYLLQMDGPLPLHYRHYIGIMAAARHQCSYLVNLHVNDFLHVGGDPKWLNGLENAPQKLQNLGELNKVLAHRPWLITKEHIEGLLKA-EEHSWSLAELVHAVVLLTHYHSLASFTFGCGISPEIHCDGGHTFRPPSVSNYCICDITNGNHSVDEMPVNSAENVS-VSDSFFEVEALMEKMRQLQECRDEEEASQEEMASRFEIEKRESMFVFSSDDEE------VTPARAVSRHFEDTSYGYKDFS-RHGMHVPTFRVQDYCWEDHGYSLVNRLYPDVGQLIDEKFHIAYNLTYNTM-AMHKDVDTSMLRRAIWNYIHCMFGIRYDDYDYGEINQLLDRSFKVYIKTVVCTP 444 The following BLAST results are available for this feature:
BLAST of TCONS_00040542 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.