TCONS_00040541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040541
Unique NameTCONS_00040541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040541 ID=TCONS_00040541|Name=TCONS_00040541|organism=Clytia hemisphaerica|type=transcript|length=704bp
atgacgctgagtccagtgaagttaACCTGATAACAACTGGTCATAACTTT
CTTACGGGCACGGTAAAACTCTGAAGGcccttgaaaattaaacatctgag
gaaaatagtcctcccacggaaaatttgacaacaagaatcttgtgcgctgg
aaagtcaaaaaatatatttcctcctcatcatcatcatcaaacaATAACCC
TCCCTCCACATCTCTCGATCAGACATTGCAGTGCCCAGTTCCTTGATCTC
TAGCCCTGTTTCccgtttcaaaatttcaagaaatgtgCGCTTTCTCGAGC
GTCTAGGGCCCACAGGACACTAAAGTAAATCTCAAACGTCATTTCGTTTT
TCGCATTGAAACAGTGACCTGAGAAAGAGCGCATCCTGCTGGTCAAGACA
GAGGAAATTCTTGGGAGTCCATAATAGATCTCTTGAAGGGTTGGGTGGTT
GCGCCAATCAAGATTTGGACTCTTTTCAAAAGGTTTGTATCACAGCCATC
AAGACTTTTCAGCATGGTTTTTGTCATGGTCAAGTCTCCGAGCCATATAG
AGGAATGGGTTCGACAAGATttctaaaagtttgaaatttgagaGCGTTAG
ACAAATTAGAGTACCACATCTTGTTTAACTTATTACAATCTTTCAAAGCT
AGACCTTTCCtaattttaaattcgttttcaGAGCTGTTAATATTTGAAAT
CCTT
Run BLAST on NCBI

transcript from alignment at sc0002460:20541..21244

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040541 ID=TCONS_00040541|Name=TCONS_00040541|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at sc0002460:20541..21244 (Clytia hemisphaerica)
AAGGATTTCAAATATTAACAGCTCtgaaaacgaatttaaaattaGGAAAG
GTCTAGCTTTGAAAGATTGTAATAAGTTAAACAAGATGTGGTACTCTAAT
TTGTCTAACGCtctcaaatttcaaacttttagaaATCTTGTCGAACCCAT
TCCTCTATATGGCTCGGAGACTTGACCATGACAAAAACCATGCTGAAAAG
TCTTGATGGCTGTGATACAAACCTTTTGAAAAGAGTCCAAATCTTGATTG
GCGCAACCACCCAACCCTTCAAGAGATCTATTATGGACTCCCAAGAATTT
CCTCTGTCTTGACCAGCAGGATGCGCTCTTTCTCAGGTCACTGTTTCAAT
GCGAAAAACGAAATGACGTTTGAGATTTACTTTAGTGTCCTGTGGGCCCT
AGACGCTCGAGAAAGCGcacatttcttgaaattttgaaacggGAAACAGG
GCTAGAGATCAAGGAACTGGGCACTGCAATGTCTGATCGAGAGATGTGGA
GGGAGGGTTATtgtttgatgatgatgatgaggaggaaatatattttttga
ctttccagcgcacaagattcttgttgtcaaattttccgtgggaggactat
tttcctcagatgtttaattttcaagggCCTTCAGAGTTTTACCGTGCCCG
TAAGAAAGTTATGACCAGTTGTTATCAGGTtaacttcactggactcagcg
tcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024667XLOC_024667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040541-exon-sc0002460-1491911889:20541..21244TCONS_00040541-exon-sc0002460-1491911889:20541..21244Clytia hemisphaericaexon
TCONS_00040541-exon-sc0002460-1510915933:20541..21244TCONS_00040541-exon-sc0002460-1510915933:20541..21244Clytia hemisphaericaexon
TCONS_00040541-exon-sc0002460-1575043694:20541..21244TCONS_00040541-exon-sc0002460-1575043694:20541..21244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002460supercontigsc0002460:20541..21244 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.139783	0.243453	0.238181	0	0.0763773	0.0921459	0.0862659	0	0.299245	0.0726136	0.1432	0.0953339	0.0990052	0.691863	0.61145	0.215216	0.110295	0.228567	0	0.20789	0	0.246534	0.0747117	0.0769513	0.206032	0	0	0.238652	0.162099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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