TCONS_00040540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040540
Unique NameTCONS_00040540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040540 ID=TCONS_00040540|Name=TCONS_00040540|organism=Clytia hemisphaerica|type=transcript|length=480bp
agttgaATGACCCTAATTTCTTTAGAGAAAGAAAACCAATCAAAGAAGGC
CAAGGCAAATACATCAAATTTGCTTGCACAGGAAATCCTTGCGAAAGATG
CAGCAATCAATCTTAATATCAACGACAAGTTGTTGACTGAATATGTGGAC
ATTGACGATATTCAAGAAAAAGCCCAAAATATGGACAGTTCTCTGGATTT
CAACATTCAAACAACAAACAGAAGTCAGTCAATAGAACAGCAACACAAAA
CCATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCTGAGGAAAATG
TTTCAGATAATGAGAAATCCCCAATCTATCAGCGCCTGGAACCAAAAGGT
ACACCATCTTATTTCATggcttgaaaaaataataatattacaACTGTCTA
AAAGGGGTTGCTTTTGCTTGATATTTGGACTTTTCCTGACGACTGACACC
AAATCAAGCTGCATTACTTTTCAATCTTTA
Run BLAST on NCBI

transcript from alignment at sc0002460:13547..14860-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040540 ID=TCONS_00040540|Name=TCONS_00040540|organism=Clytia hemisphaerica|type=transcript|length=1314bp|location=Sequence derived from alignment at sc0002460:13547..14860- (Clytia hemisphaerica)
AGTTGAATGACCCTAATTTCTTTAGAGAAAGAAAACCAATCAAAGAAGGC
CAAGGCAAATACATCAAATTTGCTTGCACAGGAAATCCTTGCGAAAGGTA
AAAGCCATTATAGCAATATTCCAAGACTAAAAAAGGCTGTGACTTTCTTT
ATACAATGCAAATGGAAATAAGAACCAAGCTAGAATTTTTTGACCGATGT
TGAATCAATATGGCCAATATGACTAAATATTTGTCATATTTCTTCCTTTA
GATGCAGCAATCAATCTTAATATCAACGACAAGTTGTTGACTGAATATGT
GGACATTGACGATATTCAAGAAAAAGCCCAAAATATGGACAGTTCTCTGG
GTAATCAATGTTTAAGAAATGTCACATTGAATAATGCAACAAAATGTGTA
TGCATGGAATATAAAATTAATACTGACACATTGCCTTAGGTTTCAAGAAC
TGCACCACTTTTTCTATTTTAATTTGTTATTACTTATCTTCAAAATGGAG
AAACTTTAATTCTAGTACCTAGATCGTTATCGTAACATTTTTTGCAGATT
TCAACATTCAAACAACAAACAGAAGTCAGTCAATAGAACAGCAACACAAA
ACCATACAGTGTTGAAACCTAAATGTCAAGCTGAAGTACCTGAGGAAAAT
GGTAAATTCTTCTTTTAGGTCTTTCCTAGATTTGAAATTGCTGAACAGTA
ATGCAAATGGTTTTCAGAGTCTTGAAACGTTGATACATTGTTCCTTATAT
ATGACCAAAGTCTTTTCTCATACACTTCGTTCTTATCGAAAAAAAATATT
TGTGCAGTATAACTCGGAAGATATCAAATAAACAATGTCATTACCTTAAG
GGATCTGGTTTACTCCAAAGACAACCAAAAGACTAAGTGATCAGCGCACC
AACACATTGAAACTGCCAAGTCCACTATTTTCTGAAAAAGGTAATCATAA
AATGGTACAAAATTGTTGAAATAATCCAAATATCAGTTATTGCTAAAGGA
AGTTCCATATATATATAGTACATTGCCAATATTAAGCATAGATAATCGAA
CAATTTCTAAGATACACTATGAACAGTTTAAAATATTATTTTGATAGCAG
CTTAACAAAACCAAAACTCTTTCCTGTTCATTAGTTTCAGATAATGAGAA
ATCCCCAATCTATCAGCGCCTGGAACCAAAAGGTACACCATCTTATTTCA
TGGCTTGAAAAAATAATAATATTACAACTGTCTAAAAGGGGTTGCTTTTG
CTTGATATTTGGACTTTTCCTGACGACTGACACCAAATCAAGCTGCATTA
CTTTTCAATCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024666XLOC_024666Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040540-exon-sc0002460-1575043694:14764..14860TCONS_00040540-exon-sc0002460-1575043694:14764..14860Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1575043694:14511..14609TCONS_00040540-exon-sc0002460-1575043694:14511..14609Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1575043694:14210..14313TCONS_00040540-exon-sc0002460-1575043694:14210..14313Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1575043694:13547..13726TCONS_00040540-exon-sc0002460-1575043694:13547..13726Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1510915933:14764..14860TCONS_00040540-exon-sc0002460-1510915933:14764..14860Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1510915933:14511..14609TCONS_00040540-exon-sc0002460-1510915933:14511..14609Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1510915933:14210..14313TCONS_00040540-exon-sc0002460-1510915933:14210..14313Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1510915933:13547..13726TCONS_00040540-exon-sc0002460-1510915933:13547..13726Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1491911889:14764..14860TCONS_00040540-exon-sc0002460-1491911889:14764..14860Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1491911889:14511..14609TCONS_00040540-exon-sc0002460-1491911889:14511..14609Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1491911889:14210..14313TCONS_00040540-exon-sc0002460-1491911889:14210..14313Clytia hemisphaericaexon
TCONS_00040540-exon-sc0002460-1491911889:13547..13726TCONS_00040540-exon-sc0002460-1491911889:13547..13726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002460supercontigsc0002460:13547..14860 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.230859	0	0	0.70618	0	0.460671	0.472712	0.110319	0	0.795802	0	0.458681	0.0468657	1.38057	1.89087	1.25866	2.72996	0.556659	0.570477	0.90701	0.555651	0.432968	0.024372	0	0.53944	0.627051	0.461004	0.145305	0.248602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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