TCONS_00040537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040537
Unique NameTCONS_00040537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040537 ID=TCONS_00040537|Name=TCONS_00040537|organism=Clytia hemisphaerica|type=transcript|length=659bp
ATTGATCAAGAGTACACGAAGAGCGTCAAAAAGAAAAGTGACAGGTATTG
AGGTGCCCACAGCAATAGATCTGAACATTACACCGGCGACAGCTATTGCA
AATATGGTTTTGGACAGCCCAAACTTAAACGAAAACAAGCCGTCTTCAAT
CTTTTCGACTCCTTGTGATCCAAAAACACCTATCAAGAAAATGCTTGACA
CATCAATTAACGAAAACATCCTGGACAACCTTCACAGCACAACACAAATC
CTACAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTCTGTCCATCCAT
TAGTTATATGCCACCTATTTCAACTTCTATGATTTCAACAAATGAGGAAA
TTGAAGAGTCATTGTCGAATGAAATTGAAGAGTCAATGTCGAATGAAATT
GAAGAGTCAATGGATATTGtTGTCTCTACTGCTGATGAGTCCAATACAAA
TGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCACCATTAGCAT
TAGTCCCTAATGTGTCAGTGACAAACATTGAAGAACCCAATTCAAAGGCT
GAAGATGAACAAATTGGTTTGTATTTCCAACTAGACCTTTTTTTCGTTGT
AGGCAAATTTTGACTTATCATCTTATACAGTAAAGCTATTGGTAGGAGGC
AAGTAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00040537-protein

>TCONS_00040537-protein ID=TCONS_00040537-protein|Name=TCONS_00040537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
LIKSTRRASKRKVTGIEVPTAIDLNITPATAIANMVLDSPNLNENKPSSI
FSTPCDPKTPIKKMLDTSINENILDNLHSTTQILQSTPGPSQPKKVCPSI
SYMPPISTSMISTNEEIEESLSNEIEESMSNEIEESMDIVVSTADESNTN
DDTSKSEPECGQAPLALVPNVSVTNIEEPNSKAEDEQIGLYFQLDLFFVV
GKF
Run BLAST on NCBI

transcript from alignment at sc0002460:5537..7607+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040537 ID=TCONS_00040537|Name=TCONS_00040537|organism=Clytia hemisphaerica|type=transcript|length=2071bp|location=Sequence derived from alignment at sc0002460:5537..7607+ (Clytia hemisphaerica)
ATTGATCAAGAGTACACGAAGAGGTGAATAGCACATTTTTTAAACAGTCC
ATTTTATGTGAACCACCTTCATTGTATGTCAACGTTAACAAACAATTCTA
CTATAAATATTTCCTTGTTTTGTTCTAGAAAACAGAATGTAAGGATAAGT
ATTAAAATTTCTATTCATTCCCTTTGCAGCGTCAAAAAGAAAAGTGACAG
GTATTGAGGTGCCCACAGCAATAGATCTGAACATTACACCGGCGACAGCT
ATTGCAAATATGGTTTTGGACAGCCCAAACTTAAACGGTAagaaattaca
tgttttttttataagcatacaaaaatccgaaaacaggctcagagatgctt
aggtcgaaagcttaataaggctgaaaaatgcttgaggggatgcttaaacc
taaagcataaatttagggaaatactcaAAATcggtaaaattccagccaaa
aaaagccaaaatcaggaaaaaaacatttttcgtaggctcaagtaatgctt
gccatatgcttaatttttccccatatctgagcctagatatgcttataagt
gcaatgcttataaaaacaaaaacatgtaGAACAACTCAAGGTTCGAATAA
CAGCCCAGAGCCTAAATTTAgcattaaaataaaatagcaAAACAGTAGAA
AACTTTACGGTTGATTATTATTTGTTGTATTaaattacacttttttaatT
ATACTTTTTTCAGTAGAATCAATCTGtaagaagcaaaaaagtaataaagC
TATAATCTGTTTTATGTTTTTGAGACACNCTGtaagaagcaaaaaagtaa
cAAAGCTATAATCTGTTTTATGTTTTTGAGACATCAGCTAAGAAACTGGT
TTTATTTACAAAGATTCTTTCTTCTTTAGAAAACAAGCCGTCTTCAATCT
TTTCGACTCCTTGTGATCCAAAAACACCTATCAAGAAAATGCGTAAgtaa
ttctatttttttttaaatgggaATTCTTTCTGATTAGAAATTTATGATTG
ATTTTATATTAACAGCTAATAAAATCTTAACATTTAATTCCTTTTTTCTA
TCAGTTGACACATCAATTAACGAAAACATCCTGGACAACCTTCACAGCAC
AACACAAATCCTACAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTCT
GTCCATCCATTAGTTATATGCGTGAGTATAGACATATTCTCACTCTTTAA
AAATGAAGACCCTAGCTAGCCAGGCGGGGATTATCTGAacgcatcaaaag
cccttttAAGAAATACCACCGGCACTTTCTTTTTCAACCTATTCACACTC
AACTACAAGCAATATTGGTCACGTAACTCCCAGCCCAAAATCTATAATGT
CGGGGGGGGCTCGTTCAGAATCAGACTTTTAGTATagataaaacaaaaat
acacAAAGAAATGGTAAGCTCAAATTTAATAAAGTTACACATTCCAAACC
TCAGGGTAGTTAACATAAATTCATACTTTTATAGCACCTATTTCAACTTC
TATGATTTCAACAAATGAGGAAATTGAAGAGTCATTGTCGAATGAAATTG
AAGAGTCAATGTCGAATGAAATTGAAGAGTCAATGGATATTGGTAAGTAA
AAACTCAAATATTTCCAAATTAGCCATTCTTTCTTTTGTCAATAAGACTT
TGTTTCTTATataaaattcttgatttttagtTGTCTCTACTGCTGATGAG
TCCAATACAAATGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGC
ACCATTAGCATTAGGTTTGTATATACATTAATTTTCATATATTTGAGTGT
CTACCACAACATATATTGAaaattggttaaaataaacAAGACAATAATAG
gatttggtcaaaaaattgtaTAGGTTTGTTTGATTCACTttagaaataat
ttcttttcattGTAGTCCCTAATGTGTCAGTGACAAACATTGAAGAACCC
AATTCAAAGGCTGAAGATGAACAAATTGGTTTGTATTTCCAACTAGACCT
TTTTTTCGTTGTAGGCAAATTTTGACTTATCATCTTATACAGTAAAGCTA
TTGGTAGGAGGCAAGTAAGAG

Coding sequence (CDS) from alignment at sc0002460:5537..7607+

>TCONS_00040537 ID=TCONS_00040537|Name=TCONS_00040537|organism=Clytia hemisphaerica|type=CDS|length=4284bp|location=Sequence derived from alignment at sc0002460:5537..7607+ (Clytia hemisphaerica)
TTGATCAAGAGTACACGAAGAGCGTCAAAAAGAAAAGTGACAGGTATTGA
GGTGCCCACAGCAATAGATCTGAACATTACACCGGCGACAGCTATTGCAA
ATATGGTTTTGGACAGCCCAAACTTAAACGAAAACAAGCCGTCTTCAATC
TTTTCGACTCCTTGTGATCCAAAAACACCTATCAAGAAAATGCTTGACAC
ATCAATTAACGAAAACATCCTGGACAACCTTCACAGCACAACACAAATCC
TACAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTCTGTCCATCCATT
AGTTATATGCCACCTATTTCAACTTCTATGATTTCAACAAATGAGGAAAT
TGAAGAGTCATTGTCGAATGAAATTGAAGAGTCAATGTCGAATGAAATTG
AAGAGTCAATGGATATTGtTGTCTCTACTGCTGATGAGTCCAATACAAAT
GATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCACCATTAGCATT
AGTCCCTAATGTGTCAGTGACAAACATTGAAGAACCCAATTCAAAGGCTG
AAGATGAACAAATTGGTTTGTATTTCCAACTAGACCTTTTTTTCGTTGTA
GGCAAATTTTGATTGATCAAGAGTACACGAAGAGCGTCAAAAAGAAAAGT
GACAGGTATTGAGGTGCCCACAGCAATAGATCTGAACATTACACCGGCGA
CAGCTATTGCAAATATGGTTTTGGACAGCCCAAACTTAAACGAAAACAAG
CCGTCTTCAATCTTTTCGACTCCTTGTGATCCAAAAACACCTATCAAGAA
AATGCTTGACACATCAATTAACGAAAACATCCTGGACAACCTTCACAGCA
CAACACAAATCCTACAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTC
TGTCCATCCATTAGTTATATGCCACCTATTTCAACTTCTATGATTTCAAC
AAATGAGGAAATTGAAGAGTCATTGTCGAATGAAATTGAAGAGTCAATGT
CGAATGAAATTGAAGAGTCAATGGATATTGtTGTCTCTACTGCTGATGAG
TCCAATACAAATGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGC
ACCATTAGCATTAGTCCCTAATGTGTCAGTGACAAACATTGAAGAACCCA
ATTCAAAGGCTGAAGATGAACAAATTGGTTTGTATTTCCAACTAGACCTT
TTTTTCGTTGTAGGCAAATTTTGATTGATCAAGAGTACACGAAGAGCGTC
AAAAAGAAAAGTGACAGGTATTGAGGTGCCCACAGCAATAGATCTGAACA
TTACACCGGCGACAGCTATTGCAAATATGGTTTTGGACAGCCCAAACTTA
AACGAAAACAAGCCGTCTTCAATCTTTTCGACTCCTTGTGATCCAAAAAC
ACCTATCAAGAAAATGCTTGACACATCAATTAACGAAAACATCCTGGACA
ACCTTCACAGCACAACACAAATCCTACAAAGCACTCCAGGACCCTCACAA
CCAAAGAAAGTCTGTCCATCCATTAGTTATATGCCACCTATTTCAACTTC
TATGATTTCAACAAATGAGGAAATTGAAGAGTCATTGTCGAATGAAATTG
AAGAGTCAATGTCGAATGAAATTGAAGAGTCAATGGATATTGtTGTCTCT
ACTGCTGATGAGTCCAATACAAATGATGATACATCAAAGTCTGAACCTGA
GTGTGGACAAGCACCATTAGCATTAGTCCCTAATGTGTCAGTGACAAACA
TTGAAGAACCCAATTCAAAGGCTGAAGATGAACAAATTGGTTTGTATTTC
CAACTAGACCTTTTTTTCGTTGTAGGCAAATTTTGATTGATCAAGAGTAC
ACGAAGAGCGTCAAAAAGAAAAGTGACAGGTATTGAGGTGCCCACAGCAA
TAGATCTGAACATTACACCGGCGACAGCTATTGCAAATATGGTTTTGGAC
AGCCCAAACTTAAACGAAAACAAGCCGTCTTCAATCTTTTCGACTCCTTG
TGATCCAAAAACACCTATCAAGAAAATGCTTGACACATCAATTAACGAAA
ACATCCTGGACAACCTTCACAGCACAACACAAATCCTACAAAGCACTCCA
GGACCCTCACAACCAAAGAAAGTCTGTCCATCCATTAGTTATATGCCACC
TATTTCAACTTCTATGATTTCAACAAATGAGGAAATTGAAGAGTCATTGT
CGAATGAAATTGAAGAGTCAATGTCGAATGAAATTGAAGAGTCAATGGAT
ATTGtTGTCTCTACTGCTGATGAGTCCAATACAAATGATGATACATCAAA
GTCTGAACCTGAGTGTGGACAAGCACCATTAGCATTAGTCCCTAATGTGT
CAGTGACAAACATTGAAGAACCCAATTCAAAGGCTGAAGATGAACAAATT
GGTTTGTATTTCCAACTAGACCTTTTTTTCGTTGTAGGCAAATTTTGATT
GATCAAGAGTACACGAAGAGCGTCAAAAAGAAAAGTGACAGGTATTGAGG
TGCCCACAGCAATAGATCTGAACATTACACCGGCGACAGCTATTGCAAAT
ATGGTTTTGGACAGCCCAAACTTAAACGAAAACAAGCCGTCTTCAATCTT
TTCGACTCCTTGTGATCCAAAAACACCTATCAAGAAAATGCTTGACACAT
CAATTAACGAAAACATCCTGGACAACCTTCACAGCACAACACAAATCCTA
CAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTCTGTCCATCCATTAG
TTATATGCCACCTATTTCAACTTCTATGATTTCAACAAATGAGGAAATTG
AAGAGTCATTGTCGAATGAAATTGAAGAGTCAATGTCGAATGAAATTGAA
GAGTCAATGGATATTGtTGTCTCTACTGCTGATGAGTCCAATACAAATGA
TGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCACCATTAGCATTAG
TCCCTAATGTGTCAGTGACAAACATTGAAGAACCCAATTCAAAGGCTGAA
GATGAACAAATTGGTTTGTATTTCCAACTAGACCTTTTTTTCGTTGTAGG
CAAATTTTGATTGATCAAGAGTACACGAAGAGCGTCAAAAAGAAAAGTGA
CAGGTATTGAGGTGCCCACAGCAATAGATCTGAACATTACACCGGCGACA
GCTATTGCAAATATGGTTTTGGACAGCCCAAACTTAAACGAAAACAAGCC
GTCTTCAATCTTTTCGACTCCTTGTGATCCAAAAACACCTATCAAGAAAA
TGCTTGACACATCAATTAACGAAAACATCCTGGACAACCTTCACAGCACA
ACACAAATCCTACAAAGCACTCCAGGACCCTCACAACCAAAGAAAGTCTG
TCCATCCATTAGTTATATGCCACCTATTTCAACTTCTATGATTTCAACAA
ATGAGGAAATTGAAGAGTCATTGTCGAATGAAATTGAAGAGTCAATGTCG
AATGAAATTGAAGAGTCAATGGATATTGtTGTCTCTACTGCTGATGAGTC
CAATACAAATGATGATACATCAAAGTCTGAACCTGAGTGTGGACAAGCAC
CATTAGCATTAGTCCCTAATGTGTCAGTGACAAACATTGAAGAACCCAAT
TCAAAGGCTGAAGATGAACAAATTGGTTTGTATTTCCAACTAGACCTTTT
TTTCGTTGTAGGCAAATTTTGATTGATCAAGAGTACACGAAGAGCGTCAA
AAAGAAAAGTGACAGGTATTGAGGTGCCCACAGCAATAGATCTGAACATT
ACACCGGCGACAGCTATTGCAAATATGGTTTTGGACAGCCCAAACTTAAA
CGAAAACAAGCCGTCTTCAATCTTTTCGACTCCTTGTGATCCAAAAACAC
CTATCAAGAAAATGCTTGACACATCAATTAACGAAAACATCCTGGACAAC
CTTCACAGCACAACACAAATCCTACAAAGCACTCCAGGACCCTCACAACC
AAAGAAAGTCTGTCCATCCATTAGTTATATGCCACCTATTTCAACTTCTA
TGATTTCAACAAATGAGGAAATTGAAGAGTCATTGTCGAATGAAATTGAA
GAGTCAATGTCGAATGAAATTGAAGAGTCAATGGATATTGtTGTCTCTAC
TGCTGATGAGTCCAATACAAATGATGATACATCAAAGTCTGAACCTGAGT
GTGGACAAGCACCATTAGCATTAGTCCCTAATGTGTCAGTGACAAACATT
GAAGAACCCAATTCAAAGGCTGAAGATGAACAAATTGGTTTGTATTTCCA
ACTAGACCTTTTTTTCGTTGTAGGCAAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024664XLOC_024664Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040537-proteinTCONS_00040537-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040537-exon-sc0002460-1491911889:5537..5559TCONS_00040537-exon-sc0002460-1491911889:5537..5559Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:5537..5559TCONS_00040537-exon-sc0002460-1510915933:5537..5559Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:5537..5559TCONS_00040537-exon-sc0002460-1575043694:5537..5559Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:5716..5823TCONS_00040537-exon-sc0002460-1491911889:5716..5823Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:5716..5823TCONS_00040537-exon-sc0002460-1510915933:5716..5823Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:5716..5823TCONS_00040537-exon-sc0002460-1575043694:5716..5823Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:6416..6478TCONS_00040537-exon-sc0002460-1491911889:6416..6478Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:6416..6478TCONS_00040537-exon-sc0002460-1510915933:6416..6478Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:6416..6478TCONS_00040537-exon-sc0002460-1575043694:6416..6478Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:6591..6707TCONS_00040537-exon-sc0002460-1491911889:6591..6707Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:6591..6707TCONS_00040537-exon-sc0002460-1510915933:6591..6707Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:6591..6707TCONS_00040537-exon-sc0002460-1575043694:6591..6707Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:7021..7128TCONS_00040537-exon-sc0002460-1491911889:7021..7128Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:7021..7128TCONS_00040537-exon-sc0002460-1510915933:7021..7128Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:7021..7128TCONS_00040537-exon-sc0002460-1575043694:7021..7128Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:7217..7300TCONS_00040537-exon-sc0002460-1491911889:7217..7300Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:7217..7300TCONS_00040537-exon-sc0002460-1510915933:7217..7300Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:7217..7300TCONS_00040537-exon-sc0002460-1575043694:7217..7300Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1491911889:7452..7607TCONS_00040537-exon-sc0002460-1491911889:7452..7607Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1510915933:7452..7607TCONS_00040537-exon-sc0002460-1510915933:7452..7607Clytia hemisphaericaexon
TCONS_00040537-exon-sc0002460-1575043694:7452..7607TCONS_00040537-exon-sc0002460-1575043694:7452..7607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002460supercontigsc0002460:5537..7607 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.202721	0	0.199309	0	0.479249	0	0	0.0544528	0.402909	0.19217	0	0.181986	0.167616	0.438495	0	0.111542	0.0903957	0	2.85599	2.19261	0	0.115372	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top