TCONS_00040534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040534
Unique NameTCONS_00040534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040534 ID=TCONS_00040534|Name=TCONS_00040534|organism=Clytia hemisphaerica|type=transcript|length=209bp
TCCGTGGTGGTCCTTCCATGCTTCGTGCACCACTATTGAGCTTACACGAA
GCACCGACATTGATGGAAGGGTTGGATGACGTCAATCTTTACTTCATTCC
TTCGCTCTTTCCATCAAAAGACGAGGAAGATTACGAAAACCAGCTGACGT
ATCAAGGCTTCCCTTCCTCCCAAACAATCATCTCACTACTCCGCCAACAA
CTCTCCGCC
Run BLAST on NCBI

transcript from alignment at sc0002456:6602..6943-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040534 ID=TCONS_00040534|Name=TCONS_00040534|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at sc0002456:6602..6943- (Clytia hemisphaerica)
TCCGTGGTGAGTTTTGAACGGTTTTTTTTAGTTTTTAGTTGCCCGAAGGT
TTTTCCACTCATTGAGTCACCCACAAATAGTTTCAAGAAAAAGTTTATTC
CCTGGTTAAAGTTTTTTTCCTGTACATTGTTTCTTACAGGTGGTCCTTCC
ATGCTTCGTGCACCACTATTGAGCTTACACGAAGCACCGACATTGATGGA
AGGGTTGGATGACGTCAATCTTTACTTCATTCCTTCGCTCTTTCCATCAA
AAGACGAGGAAGATTACGAAAACCAGCTGACGTATCAAGGCTTCCCTTCC
TCCCAAACAATCATCTCACTACTCCGCCAACAACTCTCCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024661XLOC_024661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040534-exon-sc0002456-1575043694:6938..6943TCONS_00040534-exon-sc0002456-1575043694:6938..6943Clytia hemisphaericaexon
TCONS_00040534-exon-sc0002456-1575043694:6602..6804TCONS_00040534-exon-sc0002456-1575043694:6602..6804Clytia hemisphaericaexon
TCONS_00040534-exon-sc0002456-1510915933:6938..6943TCONS_00040534-exon-sc0002456-1510915933:6938..6943Clytia hemisphaericaexon
TCONS_00040534-exon-sc0002456-1510915933:6602..6804TCONS_00040534-exon-sc0002456-1510915933:6602..6804Clytia hemisphaericaexon
TCONS_00040534-exon-sc0002456-1491911889:6938..6943TCONS_00040534-exon-sc0002456-1491911889:6938..6943Clytia hemisphaericaexon
TCONS_00040534-exon-sc0002456-1491911889:6602..6804TCONS_00040534-exon-sc0002456-1491911889:6602..6804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002456supercontigsc0002456:6602..6943 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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