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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040531 ID=TCONS_00040531|Name=TCONS_00040531|organism=Clytia hemisphaerica|type=transcript|length=916bp
ATTCATTGAcaacttcaaaaaactttattctgATCACGTTCCAACATCCT
TACAACCagactttgtgaaaaacaaTCACCTTGGAAAACATGCGTTTGAA
CTTGTTAAGAACGTAAATGACATCGATGAAATCTGGCTTCGACTCAAGGA
CGCCTTTGGAGACCGAAAGCTACTACTTTCGCAAAAGCTCGCAACCCTCA
CATCCATTGATATGAAGGTTAAAGACTCAACCAAGATCACAGAATCGCTC
AGCAAAATCGTCAATACCATGCGAGATTTGATGCTTCTAGCCTCAACGCA
TCACATCGAGAATGAATTATACTATGGGGACGCACTTACACACCTCTCAA
ACAAGTTGGGCCAAAGCAGACTGATGAGATGGCTTACATACAGCTGTGAC
AATCCGAGANGTAAGACGTTCGTAGACATGACAGCCGACCAACGTCTGAA
GTTCCTCAAAGACAACAGCCTGTGCCATCAATGCCTCTACCCTGGAGCGA
AGATCAGCACAGGCAAACACAATGAAGGGAGATGTCAACACAGATTTATT
TGTCAACATCCGTCACACGCTAATGAAAAGATCAAGAAGCATATCCTTGT
CTGCGACGAACACAAGCTGGAACAAGTCAACAAGGACATCCTGGAACACT
ACAAGGACGTTTGCATCCGAAAACATCCACTACCAACCTATTCAAAGGAC
ATCAGGATTTATCATAGTACATTCAAATCAAATCATCATCAACAAGTGGA
TGACTCGAACAATGCTATCTTTATGCTACAGTCAATCTGCATCAACAAGC
GAACGTACACGATCTTCTACGACACTGGGTGCAGTGACTTTGTCAGTCGC
TTCGAAGCAGTCAGACACCTGGGACCCAACGCTGTCAAACACTCATCATA
CGAAGTCGAAATGAAT Run BLAST on NCBI protein sequence of TCONS_00040531-protein >TCONS_00040531-protein ID=TCONS_00040531-protein|Name=TCONS_00040531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
FIDNFKKLYSDHVPTSLQPDFVKNNHLGKHAFELVKNVNDIDEIWLRLKD
AFGDRKLLLSQKLATLTSIDMKVKDSTKITESLSKIVNTMRDLMLLASTH
HIENELYYGDALTHLSNKLGQSRLMRWLTYSCDNPRXKTFVDMTADQRLK
FLKDNSLCHQCLYPGAKISTGKHNEGRCQHRFICQHPSHANEKIKKHILV
CDEHKLEQVNKDILEHYKDVCIRKHPLPTYSKDIRIYHSTFKSNHHQQVD
DSNNAIFMLQSICINKRTYTIFYDTGCSDFVSRFEAVRHLGPNAVKHSSY
EVEMN Run BLAST on NCBI transcript from alignment at sc0002455:5480..6395 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040531 ID=TCONS_00040531|Name=TCONS_00040531|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at sc0002455:5480..6395 (Clytia hemisphaerica)
ATTCATTTCGACTTCGTATGATGAGTGTTTGACAGCGTTGGGTCCCAGGT
GTCTGACTGCTTCGAAGCGACTGACAAAGTCACTGCACCCAGTGTCGTAG
AAGATCGTGTACGTTCGCTTGTTGATGCAGATTGACTGTAGCATAAAGAT
AGCATTGTTCGAGTCATCCACTTGTTGATGATGATTTGATTTGAATGTAC
TATGATAAATCCTGATGTCCTTTGAATAGGTTGGTAGTGGATGTTTTCGG
ATGCAAACGTCCTTGTAGTGTTCCAGGATGTCCTTGTTGACTTGTTCCAG
CTTGTGTTCGTCGCAGACAAGGATATGCTTCTTGATCTTTTCATTAGCGT
GTGACGGATGTTGACAAATAAATCTGTGTTGACATCTCCCTTCATTGTGT
TTGCCTGTGCTGATCTTCGCTCCAGGGTAGAGGCATTGATGGCACAGGCT
GTTGTCTTTGAGGAACTTCAGACGTTGGTCGGCTGTCATGTCTACGAACG
TCTTACNTCTCGGATTGTCACAGCTGTATGTAAGCCATCTCATCAGTCTG
CTTTGGCCCAACTTGTTTGAGAGGTGTGTAAGTGCGTCCCCATAGTATAA
TTCATTCTCGATGTGATGCGTTGAGGCTAGAAGCATCAAATCTCGCATGG
TATTGACGATTTTGCTGAGCGATTCTGTGATCTTGGTTGAGTCTTTAACC
TTCATATCAATGGATGTGAGGGTTGCGAGCTTTTGCGAAAGTAGTAGCTT
TCGGTCTCCAAAGGCGTCCTTGAGTCGAAGCCAGATTTCATCGATGTCAT
TTACGTTCTTAACAAGTTCAAACGCATGTTTTCCAAGGTGAttgtttttc
acaaagtctGGTTGTAAGGATGTTGGAACGTGATcagaataaagtttttt
gaagttgTCAATGAAT Coding sequence (CDS) from alignment at sc0002455:5480..6395 >TCONS_00040531 ID=TCONS_00040531|Name=TCONS_00040531|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0002455:5480..6395 (Clytia hemisphaerica)
ATTCATTTCGACTTCGTATGATGAGTGTTTGACAGCGTTGGGTCCCAGGT
GTCTGACTGCTTCGAAGCGACTGACAAAGTCACTGCACCCAGTGTCGTAG
AAGATCGTGTACGTTCGCTTGTTGATGCAGATTGACTGTAGCATAAAGAT
AGCATTGTTCGAGTCATCCACTTGTTGATGATGATTTGATTTGAATGTAC
TATGATAAATCCTGATGTCCTTTGAATAGGTTGGTAGTGGATGTTTTCGG
ATGCAAACGTCCTTGTAGTGTTCCAGGATGTCCTTGTTGACTTGTTCCAG
CTTGTGTTCGTCGCAGACAAGGATATGCTTCTTGATCTTTTCATTAGCGT
GTGACGGATGTTGACAAATAAATCTGTGTTGACATCTCCCTTCATTGTGT
TTGCCTGTGCTGATCTTCGCTCCAGGGTAGAGGCATTGATGGCACAGGCT
GTTGTCTTTGAGGAACTTCAGACGTTGGTCGGCTGTCATGTCTACGAACG
TCTTACNTCTCGGATTGTCACAGCTGTATGTAAGCCATCTCATCAGTCTG
CTTTGGCCCAACTTGTTTGAGAGGTGTGTAAGTGCGTCCCCATAGTATAA
TTCATTCTCGATGTGATGCGTTGAGGCTAGAAGCATCAAATCTCGCATGG
TATTGACGATTTTGCTGAGCGATTCTGTGATCTTGGTTGAGTCTTTAACC
TTCATATCAATGGATGTGAGGGTTGCGAGCTTTTGCGAAAGTAGTAGCTT
TCGGTCTCCAAAGGCGTCCTTGAGTCGAAGCCAGATTTCATCGATGTCAT
TTACGTTCTTAACAAGTTCAAACGCATGTTTTCCAAGGTGAttgtttttc
acaaagtctGGTTGTAAGGATGTTGGAACGTGATcagaataaagtttttt
gaagttgTCAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040531-exon-sc0002455-1491911889:5480..6395 | TCONS_00040531-exon-sc0002455-1491911889:5480..6395 | Clytia hemisphaerica | exon |
| TCONS_00040531-exon-sc0002455-1510915933:5480..6395 | TCONS_00040531-exon-sc0002455-1510915933:5480..6395 | Clytia hemisphaerica | exon |
| TCONS_00040531-exon-sc0002455-1575043694:5480..6395 | TCONS_00040531-exon-sc0002455-1575043694:5480..6395 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002455 | supercontig | sc0002455:5480..6395 . |
Blast
The following BLAST results are available for this feature:
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