TCONS_00040527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040527
Unique NameTCONS_00040527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040527 ID=TCONS_00040527|Name=TCONS_00040527|organism=Clytia hemisphaerica|type=transcript|length=247bp
CAGGGTTTGAATTAACGACTCGTGATTCACGAGTTAGTTTTGGCTCAgat
gaaaaaaatcacgaaTCAAAAGAATTaggaattcaaaaaaattaggagga
aaaaatttcatttctctaGCTGTTAGTGTTAAAGAAAGTATCTTGCCCCA
CATCTTTCTCTATATGTTCTTTCTCTCTTTCACTGGACATGTGTTACTAT
TCATGCCACACCCTCATTAATTACAAAAAGCTGATGGCGTGAGTTTG
Run BLAST on NCBI

transcript from alignment at sc0002454:18447..18693

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040527 ID=TCONS_00040527|Name=TCONS_00040527|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at sc0002454:18447..18693 (Clytia hemisphaerica)
CAAACTCACGCCATCAGCTTTTTGTAATTAATGAGGGTGTGGCATGAATA
GTAACACATGTCCAGTGAAAGAGAGAAAGAACATATAGAGAAAGATGTGG
GGCAAGATACTTTCTTTAACACTAACAGCtagagaaatgaaattttttcc
tcctaatttttttgaattcctAATTCTTTTGAttcgtgatttttttcatc
TGAGCCAAAACTAACTCGTGAATCACGAGTCGTTAATTCAAACCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024654XLOC_024654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040527-exon-sc0002454-1491911889:18447..18693TCONS_00040527-exon-sc0002454-1491911889:18447..18693Clytia hemisphaericaexon
TCONS_00040527-exon-sc0002454-1510915933:18447..18693TCONS_00040527-exon-sc0002454-1510915933:18447..18693Clytia hemisphaericaexon
TCONS_00040527-exon-sc0002454-1575043694:18447..18693TCONS_00040527-exon-sc0002454-1575043694:18447..18693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002454supercontigsc0002454:18447..18693 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.608	1.56805	0.91033	0.890616	1.08424	0.85678	5.16835	0.967709	0	0.839212	4.0728	0.53546	1.06943	3.88715	1.36961	0.97987	1.20712	1.23726	0	0	0.777353	3.41249	0.921851	0.838096	2.58966	0.770403	0	2.35312	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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