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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040525 ID=TCONS_00040525|Name=TCONS_00040525|organism=Clytia hemisphaerica|type=transcript|length=1553bp
AATGAATGTTACTTAAATATTAAACCTCAAAGTAATTAGAATTACAAATA
ATTTCTTTAACCTCTCAAAAACTAAAACTATATTCTGTAGGTTATTTAGT
CATTGTTTTTGTATTTAAAAAAATTAGCAAGAACTTAAATCTCATATAAT
GGGATCAAATCTGCCAAAGCCTTAAAATTTAGTTCCCACAAAAAATAGCT
TCCTCAAGGTATTGAACACTAACAAAACTTTTTTGAACATACATAAGTTC
TAATTGCGCACTATACATTAAAATACTGAAATACAGCTATTATTTGCTCA
GTTGTTTTCGCAGTGCATGTTCCCCTTTCTTAGAAATTGTGCTGTCTGAT
TTTTTCTTGGCCTGGTCAACCCAAGCTTTTACGAATGCATTTCCACGTAT
GTTGGTGAAGTAAAGAGCAATCTTCACCAGTAAATGTCTTTTTTGTTTAT
CATTTAAATTAGTTTCCTTTGTAATGATATCCCAGTTGTTAATGACGTGA
GATCTATTCAGAATGCGTCTACAAATAACATCTTTTAAGTTCTGGCCGAT
GTAGTTATCCAATGTCTTTGTGTTGAAAATTGAACGCACCGCATACTCCA
TGCTTCTAAAGAAAAGGTAAACCTGGtctgaaattttgaataagCCACCT
CTATCTGTACAATCTATCCATATCCTAGTATGATTCAGAAAATGCTGTTG
ATAATAGGTTCCAAAGTCTGCGAATGTCTCCAGAGCTTTTAGAAACTCGT
CATTTGTTGGGTTACTATAAGCTTTGTAATGTTTCAAAAGTGCATGTATG
ACATAACCACTCACATATCTGATAATATTTTGTTCTCGAGGACCAATAGG
AAAATCAGAATTAGACTCTTGAGTATCACCCTTGGTATTATCTTCAAAGA
CGAACTGGAGCAAGAAAAAtaaaatctttctgGTTATTTTTTGTCGCAAA
AGATCAGGATTATCTACATGAATCAATCGGATGAAGATGTGTTCAAAGGA
TTTGTTAATAACTGACTTTGAGTTGGACAGATTTGCATAGtagctttgaa
aaattgatttctTCAATTCAGATGCTAAAACTTCTCCTTTTGAGCTTGAT
GCTATCATATCATATAGTGTTTTGCAAACTGACTCCAATGAGGCATTGAT
AATTCCTAGATCTTCTTCTATGAGTAATTTCAAAGACTCTAGTTGCTTCT
CTCTTGTTTGCTTAAACATGCCAATATTGTAAATTCTATCTTCTGAAACA
GTTTTCAATGCATTCATGAATATTTCCTTTGAATGAACTTTTCCCCACTC
TTTAATTACTAAGTTCAATTTTGGAAGGGTTTCTGTGGTTACTTTGTCTT
CTTTTGTCGTTGATTTGCTTTTTTTTGGCTTCTTTTTCTGGATGACATTT
CTCATGATTGGCTTCGACTTGACACTTTCAATAACCTCTTTAACGATTTG
ATCCGATACAAATTGAATTTCCACATTATCTATATCAACTGTCTCTTCAA
GAGCATTCTTAGCTGCAGCATCTAAACTTTCACAAATATCATCATCCCAG
TCA Run BLAST on NCBI protein sequence of TCONS_00040525-protein >TCONS_00040525-protein ID=TCONS_00040525-protein|Name=TCONS_00040525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
DWDDDICESLDAAAKNALEETVDIDNVEIQFVSDQIVKEVIESVKSKPIM
RNVIQKKKPKKSKSTTKEDKVTTETLPKLNLVIKEWGKVHSKEIFMNALK
TVSEDRIYNIGMFKQTREKQLESLKLLIEEDLGIINASLESVCKTLYDMI
ASSSKGEVLASELKKSIFQSYYANLSNSKSVINKSFEHIFIRLIHVDNPD
LLRQKITRKILFFLLQFVFEDNTKGDTQESNSDFPIGPREQNIIRYVSGY
VIHALLKHYKAYSNPTNDEFLKALETFADFGTYYQQHFLNHTRIWIDCTD
RGGLFKISDQVYLFFRSMEYAVRSIFNTKTLDNYIGQNLKDVICRRILNR
SHVINNWDIITKETNLNDKQKRHLLVKIALYFTNIRGNAFVKAWVDQAKK
KSDSTISKKGEHALRKQLSK Run BLAST on NCBI transcript from alignment at sc0002454:6874..8426 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040525 ID=TCONS_00040525|Name=TCONS_00040525|organism=Clytia hemisphaerica|type=transcript|length=1553bp|location=Sequence derived from alignment at sc0002454:6874..8426 (Clytia hemisphaerica)
TGACTGGGATGATGATATTTGTGAAAGTTTAGATGCTGCAGCTAAGAATG
CTCTTGAAGAGACAGTTGATATAGATAATGTGGAAATTCAATTTGTATCG
GATCAAATCGTTAAAGAGGTTATTGAAAGTGTCAAGTCGAAGCCAATCAT
GAGAAATGTCATCCAGAAAAAGAAGCCAAAAAAAAGCAAATCAACGACAA
AAGAAGACAAAGTAACCACAGAAACCCTTCCAAAATTGAACTTAGTAATT
AAAGAGTGGGGAAAAGTTCATTCAAAGGAAATATTCATGAATGCATTGAA
AACTGTTTCAGAAGATAGAATTTACAATATTGGCATGTTTAAGCAAACAA
GAGAGAAGCAACTAGAGTCTTTGAAATTACTCATAGAAGAAGATCTAGGA
ATTATCAATGCCTCATTGGAGTCAGTTTGCAAAACACTATATGATATGAT
AGCATCAAGCTCAAAAGGAGAAGTTTTAGCATCTGAATTGAagaaatcaa
tttttcaaagctaCTATGCAAATCTGTCCAACTCAAAGTCAGTTATTAAC
AAATCCTTTGAACACATCTTCATCCGATTGATTCATGTAGATAATCCTGA
TCTTTTGCGACAAAAAATAACcagaaagattttaTTTTTCTTGCTCCAGT
TCGTCTTTGAAGATAATACCAAGGGTGATACTCAAGAGTCTAATTCTGAT
TTTCCTATTGGTCCTCGAGAACAAAATATTATCAGATATGTGAGTGGTTA
TGTCATACATGCACTTTTGAAACATTACAAAGCTTATAGTAACCCAACAA
ATGACGAGTTTCTAAAAGCTCTGGAGACATTCGCAGACTTTGGAACCTAT
TATCAACAGCATTTTCTGAATCATACTAGGATATGGATAGATTGTACAGA
TAGAGGTGGcttattcaaaatttcagaCCAGGTTTACCTTTTCTTTAGAA
GCATGGAGTATGCGGTGCGTTCAATTTTCAACACAAAGACATTGGATAAC
TACATCGGCCAGAACTTAAAAGATGTTATTTGTAGACGCATTCTGAATAG
ATCTCACGTCATTAACAACTGGGATATCATTACAAAGGAAACTAATTTAA
ATGATAAACAAAAAAGACATTTACTGGTGAAGATTGCTCTTTACTTCACC
AACATACGTGGAAATGCATTCGTAAAAGCTTGGGTTGACCAGGCCAAGAA
AAAATCAGACAGCACAATTTCTAAGAAAGGGGAACATGCACTGCGAAAAC
AACTGAGCAAATAATAGCTGTATTTCAGTATTTTAATGTATAGTGCGCAA
TTAGAACTTATGTATGTTCAAAAAAGTTTTGTTAGTGTTCAATACCTTGA
GGAAGCTATTTTTTGTGGGAACTAAATTTTAAGGCTTTGGCAGATTTGAT
CCCATTATATGAGATTTAAGTTCTTGCTAATTTTTTTAAATACAAAAACA
ATGACTAAATAACCTACAGAATATAGTTTTAGTTTTTGAGAGGTTAAAGA
AATTATTTGTAATTCTAATTACTTTGAGGTTTAATATTTAAGTAACATTC
ATT Coding sequence (CDS) from alignment at sc0002454:6874..8426 >TCONS_00040525 ID=TCONS_00040525|Name=TCONS_00040525|organism=Clytia hemisphaerica|type=CDS|length=1263bp|location=Sequence derived from alignment at sc0002454:6874..8426 (Clytia hemisphaerica)
GACTGGGATGATGATATTTGTGAAAGTTTAGATGCTGCAGCTAAGAATGC
TCTTGAAGAGACAGTTGATATAGATAATGTGGAAATTCAATTTGTATCGG
ATCAAATCGTTAAAGAGGTTATTGAAAGTGTCAAGTCGAAGCCAATCATG
AGAAATGTCATCCAGAAAAAGAAGCCAAAAAAAAGCAAATCAACGACAAA
AGAAGACAAAGTAACCACAGAAACCCTTCCAAAATTGAACTTAGTAATTA
AAGAGTGGGGAAAAGTTCATTCAAAGGAAATATTCATGAATGCATTGAAA
ACTGTTTCAGAAGATAGAATTTACAATATTGGCATGTTTAAGCAAACAAG
AGAGAAGCAACTAGAGTCTTTGAAATTACTCATAGAAGAAGATCTAGGAA
TTATCAATGCCTCATTGGAGTCAGTTTGCAAAACACTATATGATATGATA
GCATCAAGCTCAAAAGGAGAAGTTTTAGCATCTGAATTGAagaaatcaat
ttttcaaagctaCTATGCAAATCTGTCCAACTCAAAGTCAGTTATTAACA
AATCCTTTGAACACATCTTCATCCGATTGATTCATGTAGATAATCCTGAT
CTTTTGCGACAAAAAATAACcagaaagattttaTTTTTCTTGCTCCAGTT
CGTCTTTGAAGATAATACCAAGGGTGATACTCAAGAGTCTAATTCTGATT
TTCCTATTGGTCCTCGAGAACAAAATATTATCAGATATGTGAGTGGTTAT
GTCATACATGCACTTTTGAAACATTACAAAGCTTATAGTAACCCAACAAA
TGACGAGTTTCTAAAAGCTCTGGAGACATTCGCAGACTTTGGAACCTATT
ATCAACAGCATTTTCTGAATCATACTAGGATATGGATAGATTGTACAGAT
AGAGGTGGcttattcaaaatttcagaCCAGGTTTACCTTTTCTTTAGAAG
CATGGAGTATGCGGTGCGTTCAATTTTCAACACAAAGACATTGGATAACT
ACATCGGCCAGAACTTAAAAGATGTTATTTGTAGACGCATTCTGAATAGA
TCTCACGTCATTAACAACTGGGATATCATTACAAAGGAAACTAATTTAAA
TGATAAACAAAAAAGACATTTACTGGTGAAGATTGCTCTTTACTTCACCA
ACATACGTGGAAATGCATTCGTAAAAGCTTGGGTTGACCAGGCCAAGAAA
AAATCAGACAGCACAATTTCTAAGAAAGGGGAACATGCACTGCGAAAACA
ACTGAGCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040525-exon-sc0002454-1491911889:6874..8426 | TCONS_00040525-exon-sc0002454-1491911889:6874..8426 | Clytia hemisphaerica | exon |
| TCONS_00040525-exon-sc0002454-1510915933:6874..8426 | TCONS_00040525-exon-sc0002454-1510915933:6874..8426 | Clytia hemisphaerica | exon |
| TCONS_00040525-exon-sc0002454-1575043694:6874..8426 | TCONS_00040525-exon-sc0002454-1575043694:6874..8426 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002454 | supercontig | sc0002454:6874..8426 . |
Blast
The following BLAST results are available for this feature:
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