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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040522 ID=TCONS_00040522|Name=TCONS_00040522|organism=Clytia hemisphaerica|type=transcript|length=2884bp
TTTTAGATAAATAAATAAGACTGGCAAATTCAAGCCAACCAGTGCATTTA
AGGCACCAGCAGCTGCTAGCTGTTATCTCAATCGGTCAATATGGTCTCCA
GAAATTATTGGCTCACTTTGCTTTGAATGCAGTACCGAACTCAGCCGATC
CTGGTGTGGCATTAAGTCAAATCTTTACAACGCGATGTAAAGAAGTAAAA
GATTTGTCAAATATCTCCAAGAATCCAGCAGTGATCAAACTCATTTATCA
AGACTACGATAACAACGTGTTTCAACCCTCCATTGACATTTCAGGACTTG
ATATAAACCTTTTAGTAGAAATCCTACGAGAGATTCAAGATTTCCCAACT
TCGAAAACGAACTTTCGATCTAGCTGGGCATGTAGTGATACAGTTAACCA
TCTCAATCAATGTTGCCAGGGTTGTGACCATAAATGCTTATCTTGCGGCA
AGGATGAGTGCAAGAAAAGAAAATGCTGCACAACTGGCCAAAAATGCGGA
CACCACAAGTGCAAATTCTGCGGATCTACAAAATATGACTGTCGGAGTGA
TAAAAGTATTTGTTGCCTCACTTGCAAGACATGCTTAAACTGTCTCCTTA
AAACTTATGGACTAGCTTCTTGGCATGAgctgtttgaaaattttatcgCT
CGCTCTATAAGGGGAATTTGTCCAACTCAAGAATTGCGATTAGCTTTGTC
TATCATTTCCATCTTCCGCAATATCACAATGCATTTGACGCCACTGGAAT
GCCAGAAGATGGACAATGGAACATTCAATGACCCAAAAGCTCCAATGTAT
TGCAAGTCCTGGCAAGATATTAGAGATACAGTTTGGTATGCTGTGAAAGT
TGTTTTGAACTCTTTCCCAGGGACACAAAGGAACAATGGAGCATCGAATC
CACCAATACAGGTTATAAGCattcatgaaaaagaagaacttatCCAGTCA
TTACGTTTCATATGCACCGCTACAAATGTCCATGATCTCTCCATATACAA
TAACAGCGTCCGAAAAACAATTCAATTAGAATCTGTCATTCACACAGAAA
ATCAGTTATCATGTATTTTAGATAAAATCGAAGCTACTCAGGCTAGCCTT
GATGGAAAGACATTGAAGCTTGATGTTCATTTtcgtttcaaaaagaaaat
agattTTCACTTAGAATGCAAGGAAGCTGAGCAGATGGAGCAAATTATGG
AAAGTGCTTTTTTACAATACCTTTCAAAATCTCATTTACAAACTCCAAAC
CGAAACACAGTTAAAGTCACTCTGCTTCGTTTTGTACGTTTAGAAAAATC
AGCTTCGAAAACTAAGGACATTAATGTCACATTGAAGATTATTTATTCTC
GACTACAAATATCAGGAGAATACGAAGATAGAAAATCAGaagcttctcaa
aaattatggaaagcattaaaagaatatttacaAGAGCAGCTGCCGATTGC
AAATGTGAAACTGGACGGTTGGGAGTATGGCTCAATCATTATTACAATGT
CGCTATGGAAGAAAGATGACAGCTTTTGGGATTCTTATGAAATTCTAAAA
GTTGAGCAAGCATTGACTGGTGTTGTAGATCTTGCAGTAAAAATACTCCC
AAAGAGCATGGGCTTGATCCAGCATATCTCAAAGGGGTCAACATATGAAG
ACCCCGATGCAATTGATGAGGTTTCTGCTTGCTTTGTCGTGGAAACTAGA
TCGGATGAAGTTATTGAATTGTTCAACCCTTTGAATATCAAAGAATTAAA
TGCAACGTTATCTAAATCCACCGAGGAGTTTTCTTTCTCAGGCTTACAAA
GAAGAGAAATAGAAGCAAAACTTGAAGTTCTTCAATCGCCATTACTAAGT
ATTATCAAAGAGGAGGCTCTAGAAGGAGACATTTACCAAAAGTTAACTTC
TGACCTACAAGATGCTAtcgataaagaaaaaatcagacAGGAAGAACTCA
TTTCCAACTTTAGATCGAGAAGAAGGACAAAAACTTCAGTAAACGATTCG
CCTGTTTATTCACCGTTATGTTCACCGTTTTGTTCACCGTTTTGTTCGCC
GGCCACATCACCGCTTAGCTCACCAATAAGTTCGCCCTATTGCACGCCCG
TTTCAGGAAGGGCGTTCAGTTTACCACTTGCAAATTGGTACCCAGCTCCA
AGACGGAGAGCCTACACCGAGCAACCAGATCAAATGCAAAACATGGGGCA
TAGCGAAGCTCACGTTATTCACTGGACATGTGGTAATTGTACCTTTCAGA
ATAGTTCTGGTTCCTTGTCCTGTGCAATATGTCTAGCAAAGAAGCCAACG
CATGCAGATTTTCTCTCCAGCCAGGAGGATATATTCTCACCGTCACTAGA
CGTGAAATCACAGCAGAGTAAAACAGAAATCAATTCGGACAAAACTGGCA
CTACTCATAAGGGTACCTGAAAATCGCGTGTCATGAATTTTGTATGCTTA
AAAGTGTACAATTTCGGATGctcttgactttttgaatttaagTTAAAAAT
GATCTTAAGGTACTTAACCTGTTCTTATTATCTgggtatttttgttaatt
tcccTAAGAAAAAATACCTTGTAATATCTAGTTGGAAAATTTCCAATGTA
GGAGAGGTCAAAGTCTGGAAATGTTTCTGCTACAattcgatttttcaaaa
ttatgaaCTAGATAAGAATTATGAAAAATGGctgatggtcaaaatattac
tCTGGGGTACCTACTAGCTATCCCcccactaattaatttttcgaaaattt
ttcacccaagacattcttattccaatcccctcgcttattaatttttggga
aaatgtttttgaaagttctctcttttgtcctaattctgctgtattagcct
ccttttcaaaaacttcccacccaggacatttttN Run BLAST on NCBI protein sequence of TCONS_00040522-protein >TCONS_00040522-protein ID=TCONS_00040522-protein|Name=TCONS_00040522-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MHLTPLECQKMDNGTFNDPKAPMYCKSWQDIRDTVWYAVKVVLNSFPGTQ
RNNGASNPPIQVISIHEKEELIQSLRFICTATNVHDLSIYNNSVRKTIQL
ESVIHTENQLSCILDKIEATQASLDGKTLKLDVHFRFKKKIDFHLECKEA
EQMEQIMESAFLQYLSKSHLQTPNRNTVKVTLLRFVRLEKSASKTKDINV
TLKIIYSRLQISGEYEDRKSEASQKLWKALKEYLQEQLPIANVKLDGWEY
GSIIITMSLWKKDDSFWDSYEILKVEQALTGVVDLAVKILPKSMGLIQHI
SKGSTYEDPDAIDEVSACFVVETRSDEVIELFNPLNIKELNATLSKSTEE
FSFSGLQRREIEAKLEVLQSPLLSIIKEEALEGDIYQKLTSDLQDAIDKE
KIRQEELISNFRSRRRTKTSVNDSPVYSPLCSPFCSPFCSPATSPLSSPI
SSPYCTPVSGRAFSLPLANWYPAPRRRAYTEQPDQMQNMGHSEAHVIHWT
CGNCTFQNSSGSLSCAICLAKKPTHADFLSSQEDIFSPSLDVKSQQSKTE
INSDKTGTTHKGT Run BLAST on NCBI transcript from alignment at sc0002453:12239..15122 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040522 ID=TCONS_00040522|Name=TCONS_00040522|organism=Clytia hemisphaerica|type=transcript|length=2884bp|location=Sequence derived from alignment at sc0002453:12239..15122 (Clytia hemisphaerica)
Naaaaatgtcctgggtgggaagtttttgaaaaggaggctaatacagcaga
attaggacaaaagagagaactttcaaaaacattttcccaaaaattaataa
gcgaggggattggaataagaatgtcttgggtgaaaaattttcgaaaaatt
aattagtgggGGGATAGCTAGTAGGTACCCCAGagtaatattttgaccat
cagCCATTTTTCATAATTCTTATCTAGttcataattttgaaaaatcgaat
TGTAGCAGAAACATTTCCAGACTTTGACCTCTCCTACATTGGAAATTTTC
CAACTAGATATTACAAGGTATTTTTTCTTAgggaaattaacaaaaatacc
cAGATAATAAGAACAGGTTAAGTACCTTAAGATCATTTTTAActtaaatt
caaaaagtcaagagCATCCGAAATTGTACACTTTTAAGCATACAAAATTC
ATGACACGCGATTTTCAGGTACCCTTATGAGTAGTGCCAGTTTTGTCCGA
ATTGATTTCTGTTTTACTCTGCTGTGATTTCACGTCTAGTGACGGTGAGA
ATATATCCTCCTGGCTGGAGAGAAAATCTGCATGCGTTGGCTTCTTTGCT
AGACATATTGCACAGGACAAGGAACCAGAACTATTCTGAAAGGTACAATT
ACCACATGTCCAGTGAATAACGTGAGCTTCGCTATGCCCCATGTTTTGCA
TTTGATCTGGTTGCTCGGTGTAGGCTCTCCGTCTTGGAGCTGGGTACCAA
TTTGCAAGTGGTAAACTGAACGCCCTTCCTGAAACGGGCGTGCAATAGGG
CGAACTTATTGGTGAGCTAAGCGGTGATGTGGCCGGCGAACAAAACGGTG
AACAAAACGGTGAACATAACGGTGAATAAACAGGCGAATCGTTTACTGAA
GTTTTTGTCCTTCTTCTCGATCTAAAGTTGGAAATGAGTTCTTCCTgtct
gattttttctttatcgaTAGCATCTTGTAGGTCAGAAGTTAACTTTTGGT
AAATGTCTCCTTCTAGAGCCTCCTCTTTGATAATACTTAGTAATGGCGAT
TGAAGAACTTCAAGTTTTGCTTCTATTTCTCTTCTTTGTAAGCCTGAGAA
AGAAAACTCCTCGGTGGATTTAGATAACGTTGCATTTAATTCTTTGATAT
TCAAAGGGTTGAACAATTCAATAACTTCATCCGATCTAGTTTCCACGACA
AAGCAAGCAGAAACCTCATCAATTGCATCGGGGTCTTCATATGTTGACCC
CTTTGAGATATGCTGGATCAAGCCCATGCTCTTTGGGAGTATTTTTACTG
CAAGATCTACAACACCAGTCAATGCTTGCTCAACTTTTAGAATTTCATAA
GAATCCCAAAAGCTGTCATCTTTCTTCCATAGCGACATTGTAATAATGAT
TGAGCCATACTCCCAACCGTCCAGTTTCACATTTGCAATCGGCAGCTGCT
CTtgtaaatattcttttaatgctttccataatttttgagaagcttCTGAT
TTTCTATCTTCGTATTCTCCTGATATTTGTAGTCGAGAATAAATAATCTT
CAATGTGACATTAATGTCCTTAGTTTTCGAAGCTGATTTTTCTAAACGTA
CAAAACGAAGCAGAGTGACTTTAACTGTGTTTCGGTTTGGAGTTTGTAAA
TGAGATTTTGAAAGGTATTGTAAAAAAGCACTTTCCATAATTTGCTCCAT
CTGCTCAGCTTCCTTGCATTCTAAGTGAAaatctattttctttttgaaac
gaAAATGAACATCAAGCTTCAATGTCTTTCCATCAAGGCTAGCCTGAGTA
GCTTCGATTTTATCTAAAATACATGATAACTGATTTTCTGTGTGAATGAC
AGATTCTAATTGAATTGTTTTTCGGACGCTGTTATTGTATATGGAGAGAT
CATGGACATTTGTAGCGGTGCATATGAAACGTAATGACTGGataagttct
tctttttcatgaatGCTTATAACCTGTATTGGTGGATTCGATGCTCCATT
GTTCCTTTGTGTCCCTGGGAAAGAGTTCAAAACAACTTTCACAGCATACC
AAACTGTATCTCTAATATCTTGCCAGGACTTGCAATACATTGGAGCTTTT
GGGTCATTGAATGTTCCATTGTCCATCTTCTGGCATTCCAGTGGCGTCAA
ATGCATTGTGATATTGCGGAAGATGGAAATGATAGACAAAGCTAATCGCA
ATTCTTGAGTTGGACAAATTCCCCTTATAGAGCGAGcgataaaattttca
aacagcTCATGCCAAGAAGCTAGTCCATAAGTTTTAAGGAGACAGTTTAA
GCATGTCTTGCAAGTGAGGCAACAAATACTTTTATCACTCCGACAGTCAT
ATTTTGTAGATCCGCAGAATTTGCACTTGTGGTGTCCGCATTTTTGGCCA
GTTGTGCAGCATTTTCTTTTCTTGCACTCATCCTTGCCGCAAGATAAGCA
TTTATGGTCACAACCCTGGCAACATTGATTGAGATGGTTAACTGTATCAC
TACATGCCCAGCTAGATCGAAAGTTCGTTTTCGAAGTTGGGAAATCTTGA
ATCTCTCGTAGGATTTCTACTAAAAGGTTTATATCAAGTCCTGAAATGTC
AATGGAGGGTTGAAACACGTTGTTATCGTAGTCTTGATAAATGAGTTTGA
TCACTGCTGGATTCTTGGAGATATTTGACAAATCTTTTACTTCTTTACAT
CGCGTTGTAAAGATTTGACTTAATGCCACACCAGGATCGGCTGAGTTCGG
TACTGCATTCAAAGCAAAGTGAGCCAATAATTTCTGGAGACCATATTGAC
CGATTGAGATAACAGCTAGCAGCTGCTGGTGCCTTAAATGCACTGGTTGG
CTTGAATTTGCCAGTCTTATTTATTTATCTAAAA Coding sequence (CDS) from alignment at sc0002453:12239..15122 >TCONS_00040522 ID=TCONS_00040522|Name=TCONS_00040522|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0002453:12239..15122 (Clytia hemisphaerica)
TCAGGTACCCTTATGAGTAGTGCCAGTTTTGTCCGAATTGATTTCTGTTT
TACTCTGCTGTGATTTCACGTCTAGTGACGGTGAGAATATATCCTCCTGG
CTGGAGAGAAAATCTGCATGCGTTGGCTTCTTTGCTAGACATATTGCACA
GGACAAGGAACCAGAACTATTCTGAAAGGTACAATTACCACATGTCCAGT
GAATAACGTGAGCTTCGCTATGCCCCATGTTTTGCATTTGATCTGGTTGC
TCGGTGTAGGCTCTCCGTCTTGGAGCTGGGTACCAATTTGCAAGTGGTAA
ACTGAACGCCCTTCCTGAAACGGGCGTGCAATAGGGCGAACTTATTGGTG
AGCTAAGCGGTGATGTGGCCGGCGAACAAAACGGTGAACAAAACGGTGAA
CATAACGGTGAATAAACAGGCGAATCGTTTACTGAAGTTTTTGTCCTTCT
TCTCGATCTAAAGTTGGAAATGAGTTCTTCCTgtctgattttttctttat
cgaTAGCATCTTGTAGGTCAGAAGTTAACTTTTGGTAAATGTCTCCTTCT
AGAGCCTCCTCTTTGATAATACTTAGTAATGGCGATTGAAGAACTTCAAG
TTTTGCTTCTATTTCTCTTCTTTGTAAGCCTGAGAAAGAAAACTCCTCGG
TGGATTTAGATAACGTTGCATTTAATTCTTTGATATTCAAAGGGTTGAAC
AATTCAATAACTTCATCCGATCTAGTTTCCACGACAAAGCAAGCAGAAAC
CTCATCAATTGCATCGGGGTCTTCATATGTTGACCCCTTTGAGATATGCT
GGATCAAGCCCATGCTCTTTGGGAGTATTTTTACTGCAAGATCTACAACA
CCAGTCAATGCTTGCTCAACTTTTAGAATTTCATAAGAATCCCAAAAGCT
GTCATCTTTCTTCCATAGCGACATTGTAATAATGATTGAGCCATACTCCC
AACCGTCCAGTTTCACATTTGCAATCGGCAGCTGCTCTtgtaaatattct
tttaatgctttccataatttttgagaagcttCTGATTTTCTATCTTCGTA
TTCTCCTGATATTTGTAGTCGAGAATAAATAATCTTCAATGTGACATTAA
TGTCCTTAGTTTTCGAAGCTGATTTTTCTAAACGTACAAAACGAAGCAGA
GTGACTTTAACTGTGTTTCGGTTTGGAGTTTGTAAATGAGATTTTGAAAG
GTATTGTAAAAAAGCACTTTCCATAATTTGCTCCATCTGCTCAGCTTCCT
TGCATTCTAAGTGAAaatctattttctttttgaaacgaAAATGAACATCA
AGCTTCAATGTCTTTCCATCAAGGCTAGCCTGAGTAGCTTCGATTTTATC
TAAAATACATGATAACTGATTTTCTGTGTGAATGACAGATTCTAATTGAA
TTGTTTTTCGGACGCTGTTATTGTATATGGAGAGATCATGGACATTTGTA
GCGGTGCATATGAAACGTAATGACTGGataagttcttctttttcatgaat
GCTTATAACCTGTATTGGTGGATTCGATGCTCCATTGTTCCTTTGTGTCC
CTGGGAAAGAGTTCAAAACAACTTTCACAGCATACCAAACTGTATCTCTA
ATATCTTGCCAGGACTTGCAATACATTGGAGCTTTTGGGTCATTGAATGT
TCCATTGTCCATCTTCTGGCATTCCAGTGGCGTCAAATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00040522-exon-sc0002453-1491911889:12239..15122 | TCONS_00040522-exon-sc0002453-1491911889:12239..15122 | Clytia hemisphaerica | exon |
| TCONS_00040522-exon-sc0002453-1510915933:12239..15122 | TCONS_00040522-exon-sc0002453-1510915933:12239..15122 | Clytia hemisphaerica | exon |
| TCONS_00040522-exon-sc0002453-1575043694:12239..15122 | TCONS_00040522-exon-sc0002453-1575043694:12239..15122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002453 | supercontig | sc0002453:12239..15122 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR001876 | Znf_RanBP2 |
Blast
The following BLAST results are available for this feature:
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