TCONS_00040521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040521
Unique NameTCONS_00040521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040521 ID=TCONS_00040521|Name=TCONS_00040521|organism=Clytia hemisphaerica|type=transcript|length=467bp
tttttttttcccccccccccccctattcggggctattaggtacccgagag
tgaGAACAAAGGCTTTGTCGACTCTAAAACACCTTTTCCATGGTGATGTA
TCCATATTTTTCTTGGTAGCCGGTTTCTGAATAGGGGGCGGGGGTTCCCT
TTTTGCCTAAATAAATCAGTAACAGGTTAAAATTGGGGTGATGGTAAATA
AGACAAATTTTCAGGGTTGAAAAACATGGTTTGTACATCATGGGTCAGTA
CCCATCCTGCACACACCGTCCCTGTTTCCAAAATGTTTCCAAAACCAGAC
AAACAAATCTGAAAGATAAACAGAATTGGCACtctttttcaaatgatatc
cCATAACGGTAAAACATATTTTTAATACGTATAATTATCTGCAGACTTTA
GTTTCAACGATTTGTATTTTTGACTGAATATTTCACTTTACTTACTTGAA
AATGACAACAAATAGAT
Run BLAST on NCBI

transcript from alignment at sc0002453:11710..12176

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040521 ID=TCONS_00040521|Name=TCONS_00040521|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0002453:11710..12176 (Clytia hemisphaerica)
ATCTATTTGTTGTCATTTTCAAGTAAGTAAAGTGAAATATTCAGTCAAAA
ATACAAATCGTTGAAACTAAAGTCTGCAGATAATTATACGTATTAAAAAT
ATGTTTTACCGTTATGggatatcatttgaaaaagaGTGCCAATTCTGTTT
ATCTTTCAGATTTGTTTGTCTGGTTTTGGAAACATTTTGGAAACAGGGAC
GGTGTGTGCAGGATGGGTACTGACCCATGATGTACAAACCATGTTTTTCA
ACCCTGAAAATTTGTCTTATTTACCATCACCCCAATTTTAACCTGTTACT
GATTTATTTAGGCAAAAAGGGAACCCCCGCCCCCTATTCAGAAACCGGCT
ACCAAGAAAAATATGGATACATCACCATGGAAAAGGTGTTTTAGAGTCGA
CAAAGCCTTTGTTCtcactctcgggtacctaatagccccgaatagggggg
ggggggggaaaaaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024648XLOC_024648Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040521-exon-sc0002453-1491911889:11710..12176TCONS_00040521-exon-sc0002453-1491911889:11710..12176Clytia hemisphaericaexon
TCONS_00040521-exon-sc0002453-1510915933:11710..12176TCONS_00040521-exon-sc0002453-1510915933:11710..12176Clytia hemisphaericaexon
TCONS_00040521-exon-sc0002453-1575043694:11710..12176TCONS_00040521-exon-sc0002453-1575043694:11710..12176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002453supercontigsc0002453:11710..12176 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.176792	0	0	0.287066	0	0.183163	0.91454	1.51961	0.390415	0.586566	1.96135	3.3858	1.46177	3.21223	3.32383	5.64194	1.419	3.29687	2.6575	2.76705	4.90241	6.43937	0.152626	0.466505
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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