TCONS_00040518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040518
Unique NameTCONS_00040518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040518 ID=TCONS_00040518|Name=TCONS_00040518|organism=Clytia hemisphaerica|type=transcript|length=829bp
CTGTGATCCGTCATTTGTACCGTTCAAAACAAATTCGGATATTGAAAGCT
CATCGGAAGTGTCATTATGTTTtgATTTCATCTTTCATTCGAAACACGTA
TGGTGACAATGGAGTCACAAATGGTAACTGATGGCGTATATTTAAAACTC
TTACCTCTAAGAAGTACGACCACTCACATTAGAGATGTAATGAGTTCTTT
TgaactCTTCAATAAAGCATTCTAATGGCAAGCCTTGGACGGAAAGTATT
GACGCGTTCACTATACATTGATTTAACAGCATTATCAACATATTAACCAA
GGCTCAGCTAATGCTCTTACCGAATGGCAGTCTTCAAATACACTTAATAT
AACATCCGCTATTCGTGCAAAACAGAAATaaaatcaatTGAAACACAAAG
TTCGTCGAAAAAACACAACTGATCGGGTCGAGTTCNCCAGTGCCATATCA
TACCAATCAACAATATCAACATTAACTTTTCTTAAAGCTTTATAAATGTC
TCGTCTATATGTAAATTCCAGGGCTCCTTTTGGACAACGATTATTAACCC
AAGACGAGAGAAGCTCGCGATTTTtgaggacaattttttttctggccaaa
aatgccggatcTATGTcagaaattgccgtttttgcaggactttttttaat
attctttgttgtttttttcactcaaaaacattTATAACAATGCCCACTGG
CCCgcacttttcaaaatttatttaatttatcattttataggaaacaattt
tttgtaagaactaagtaGCAAAAACCTCTGTATCTTTTGAaaaattgaat
attttccaagaattttttcagatgataAC
Run BLAST on NCBI

transcript from alignment at sc0002450:5276..8149+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040518 ID=TCONS_00040518|Name=TCONS_00040518|organism=Clytia hemisphaerica|type=transcript|length=2874bp|location=Sequence derived from alignment at sc0002450:5276..8149+ (Clytia hemisphaerica)
CTGTGATCCGTCATTTGTACCGTTCAAAACAAATTCGGATATTGAAAGCT
CATCGGAAGTGTCATTATGTTTtggtaaatatttttaaacttaTACTATA
TATATCTGCTACTTTTAAACTATGACTTAATCCTGATTTAGTTTAACTCT
GTGTAACCCTGTAAACTCAGTATATTTTACTCTCATATTTTTATCTTCAG
ATTTCATCTTTCATTCGAAACACGTATGGTGACAATGGAGTCACAAATGG
TAACTGATGGCGTATATTTAAAACTCTTACCTCTAAGAAGTACGACCACT
CACATTAGAGATGTAATGAGTTCTTTTgagtaagttttttttgttaGAAT
AGTGTCTgtgtttttgtagaaatgttTACAAGCCAAGGAATTGTTTCTTG
TACGTAGATCGGGTGGTGCTTTCATACGATCTTAAAATTAAACACGACTT
GCGTGACCATTCCTTTGCGTAGTgagaaaataattactttccTTTTCTTC
TTACAAATTTCGAGTATGAATACTTATCCAACGATGAATGAGGTGAAAAC
TATTCATTCCGCGTTAGGGATCTTAAAATATAATTGTGATGATTTCAGCT
TTAGAAGCGTTTTCAAAGATTTGACACATAGTCAATGGCAACATAGTGAA
ACTATGTGAATCATAGTTGCCTATAAGACGCAAAGAATAACACTgattca
aagtttcttttttatttcagactCTTCAATAAAGCATTCTAATGGCAAGC
CTTGGACGGAAAGTATTGACGCGTTCACTATACATTGATTTAACAGCATT
ATCAACATATTAACCAAGGCTCAGCTAATGCTCTTACCGAATGGCAGTCT
TCAAATACACTTAATATAACATCCGCTATTCGTGCAAAACAGAAATGTAA
GTTAAACATTTGGAACATAGATTTGATTGTGTCCTGATGAGAAGGGGAGC
actcaattaaaaaaaacgacCTTGCGTGCGGCCCAAAACaatgcctttga
aatcggacccttacagtgcaaaaaaaatttgccagtTTTAAGCAAATTTG
ACGAAAAACATACGGTACTTTTTGACCAGATTTTCCATATTTTACACCTT
CAGAGTGCACTTTGCTCATTTCTATCCTTAGTGGCTGTCCACTAGTACGC
ACGCACTAAAATGCCGAAAATCGAGTAGCCCTCCCCATGTACGGACACGT
ACGCAAatagctataccccctggtaagtacgtacgTACGTACGTACAAGC
AAAACAGGGCtatgaaaaacttttctttgcgtacgtacattttccttttc
ctttgacccctcccctcccactgtacgcaagcatacgcttttgagaacaC
CCCtacccccttagtgcgtacgtactatgtggacgacCCCTTACAGTGct
ctttgggaagcttggaaaaaggacTCTTAAGGGCAGCGCACAGTAGATCA
TTTACGAGGCCCTCTCCCATGTCTGAGATACACCAGGTGAATAGAATTTA
GTGATCGACGTATTATTCTTTCCGTTATTACTTTAGTTATTACTTTTACC
AGATGTGTCGCTTAAGGATTTCGCGACTACACGATGAAGGAAATTCTAAA
AGCTgattagtagggggccaaggctggggttccgtgacatcttttctacg
acctaaccatttttagtccatcCGAAAGAACAGTATACTATGAGATATTt
ctgagagggaggacgcggattaggcccgggaaaacttttgtgatcaaaat
agtgacgccataggcaaagctgcaagggaaaataagggatagagaaatag
cttattttcataagtcaaaataaacgaagatgattggtaccatctgaaaa
agcatgaaattctgagcaaaaaagtgtattacaacaactctctgactaaa
acacataaagaaatacagccccttgaagttaaaaaacataccgacgtcag
tacgatcaagacaagatttgacgtcaaatcacagtagagcgctgacagtt
agttggtcttaaaccggctgtatttctttgtgtgttttagatGGGAATGA
GAGAGATGAAAATAGGCCTAGAAAATGGCCTAgaaaataatctgaaaata
ttaGAATATTCTAGGAAATCACTACGCTAAAAATGTTGGTAAATAAAATA
GTAGCtaagaatttcaattccaaataATTAAACATATCATACACCAATTA
CACCATTTAGTACACCATTCTAGACAATTCTGTCCAGTGCCATATCATAC
CAATCAACANGGCGATCGGGGGAAGGCttcaattttgggaaaaaaacaaa
tattacaCGAATTGGGTTCAAAATGTAATGTATCTAAAAGCTTTCGTCTT
TAGtgtattatttacaaatttataaCAACGTCATGGCAATTTGTAAGATT
GTGGTACATAtttccaattttcagaaaatcaatTGAAACACAAAGTTCGT
CGAAAAAACACAACTGATCGGGTCGAGTTCNCCAGTGCCATATCATACCA
ATCAACAATATCAACATTAACTTTTCTTAAAGCTTTATAAATGTCTCGTC
TATATGTAAATTCCAGGGCTCCTTTTGGACAACGATTATTAACCCAAGAC
GAGAGAAGCTCGCGATTTTtgaggacaattttttttctggccaaaaatgc
cggatcTATGTcagaaattgccgtttttgcaggactttttttaatattct
ttgttgtttttttcactcaaaaacattTATAACAATGCCCACTGGCCCgc
acttttcaaaatttatttaatttatcattttataggaaacaattttttgt
aagaactaagtaGCAAAAACCTCTGTATCTTTTGAaaaattgaatatttt
ccaagaattttttcagatgataAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024645XLOC_024645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040518-exon-sc0002450-1491911889:5276..5349TCONS_00040518-exon-sc0002450-1491911889:5276..5349Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1510915933:5276..5349TCONS_00040518-exon-sc0002450-1510915933:5276..5349Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1575043694:5276..5349TCONS_00040518-exon-sc0002450-1575043694:5276..5349Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1491911889:5476..5604TCONS_00040518-exon-sc0002450-1491911889:5476..5604Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1510915933:5476..5604TCONS_00040518-exon-sc0002450-1510915933:5476..5604Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1575043694:5476..5604TCONS_00040518-exon-sc0002450-1575043694:5476..5604Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1491911889:5996..6171TCONS_00040518-exon-sc0002450-1491911889:5996..6171Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1510915933:5996..6171TCONS_00040518-exon-sc0002450-1510915933:5996..6171Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1575043694:5996..6171TCONS_00040518-exon-sc0002450-1575043694:5996..6171Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1491911889:7700..8149TCONS_00040518-exon-sc0002450-1491911889:7700..8149Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1510915933:7700..8149TCONS_00040518-exon-sc0002450-1510915933:7700..8149Clytia hemisphaericaexon
TCONS_00040518-exon-sc0002450-1575043694:7700..8149TCONS_00040518-exon-sc0002450-1575043694:7700..8149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002450supercontigsc0002450:5276..8149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84502	1.59636	2.5538	1.68912	1.26874	0.754066	0.564347	0.878087	0.614093	0.136619	1.44219	0.368679	0.60115	1.22034	0.419595	0.273523	0.403225	0.322838	0.0924115	0.205274	0.379667	0.747385	0.182195	0.604774	0.338934	0.68255	0.630472	1.34302	0.506481	0.157498
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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