TCONS_00040513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040513
Unique NameTCONS_00040513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040513 ID=TCONS_00040513|Name=TCONS_00040513|organism=Clytia hemisphaerica|type=transcript|length=492bp
CTGAGTAATCCTGTTAGTCAGTTGTAGCACCTCTTTGGAGTGGACTGGTG
GAGGCAGCACAAGGCATAGAACTGAGATCCAGATGCGCATGAGCCCAAGA
AGAGAAACGATTGAAAGAAATGGCAATCCCTGAACACCAAAACCTaaact
ttgaaaaacctttTGGGTTAAAGAATAAATTTGGACATGTTGTCATCTTG
GCTGGTATTAAATTTTGGAAGAACGATGTCGTGATGGACAAGCTAAATAA
AGTTCAATTTTACTTCAGTGTTGTGGATATGGTTAAGCAATTTTTTCTAC
CTTTTGACAACCTTATCAATTTTTATCTAACTAATTTTTATTCCAATTAA
CAATAGGTGTGATTCAGACTCAGTCAAGTTTGTCATGGAACTACTACAGA
CACTAGATTTACTGGGCAAGTTTTATTTTGATCATTTGTTTATTAATCGT
ATCCTCTGCGCTCTAACTTTAATAAATTGCAACCATTTCTAA
Run BLAST on NCBI

transcript from alignment at sc0002447:86..3801-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040513 ID=TCONS_00040513|Name=TCONS_00040513|organism=Clytia hemisphaerica|type=transcript|length=3716bp|location=Sequence derived from alignment at sc0002447:86..3801- (Clytia hemisphaerica)
CTGAGTAATCCTGTTAGTCAGTTGTAGCACCTCTTTGGAGTGGACTGGTG
GAGGCAGCACAAGGCATAGAACTGAGATCCAGATGCGCATGAGCCCAAGA
AGAGAAACGATTGAAAGAAATGGCAATCCCTGAACACCAAAACCTAAACT
TTGAAAAACCTTTTGGGTATGTTACTTTTGACTTCTTTATGAAAAAGCTT
TAAGATGCTATGTTTATTTTTTTACACCTCTACAATTATTGGTGGTTCAA
GTTATAGTCTGTTACCCCCCTGTGGTCGATATGGACATTTCCTTTTTTTG
AAAAACTTCAGGATTATGAACATTCATGATTTTTTATGAGAAAATCTTGG
ATTTTCAGATACTTGGAAATATAGAAAATAGAGCAAATTTTATGGATTTT
CCAATACTTGGTACGGNGCCTCTCAATTTTTCGTCCCCCCCCCCCCCCTG
TGATGGACTTGGAAAAGCAGATTGCCTAGTGCTCAACTACTAAAATTTTA
TGGTGTACTTAATTTTGCGAGAAACACCCACAAAATAAAATAGCAGAGAG
AATTTTTTAAGGGATCCACTGGATGTTTTGTATGTTTTTTGACGAAAAAC
AATTTTGACGCAATTTTACAGAGCTAACCGTTATACAGCATTTCCTATGA
TATAACTGCAAGAAAGTAAGAATATTTTTTCCCGAAGCTCAACCAGCTAT
TTATGTTAAAATTTTTTACATTAAAAGCAAGTTTGGATAGTAATCCGTCA
AAAAGGATAAACGTAAATCCACTTGTATGATCCAATTTTTAGGAAGAGCC
GTCTTTTTATGAACTTCCAACCCTAATCAAAGATTGTTTTCTATTCCATC
CCATTTCTCTGTGTGGACAATGTCAGTACAATACAGTCTAATTCATAAAA
TACTACCAACAGGTGAGGGAATTGAAATTGATTGCACTGTCTGAGATGGT
ACTGTAACTGGTGAATTCTAAAAGCTTTGGTAGTTCCTGAGTTGTGTAGA
TTTCTCTTCGTTTTGAGAGTTTTTGGGAGACATAAATGGCTCATCTTCTA
ATGATTTTTATATTCTTTTTACAGGTTAAAGAATAAATTTGGACATGTTG
TCATCTTGGCTGGTATTAAATTTTGGAAGAACAATGTCGTGATGGACAAG
CTAAATAAAGTTCAATTTTACTTTCAGTATTGTGGATATGGTTAAGCAAT
TTTTTCTACCTTTTGACAACCTTATCAATTTTTATCTAACTAATTTTTAT
TCCAATTAACAATAGGTGTGATTCAGACTCGGTCAAGTTTGTCATGGGAC
TACTACAGACACCAGATTTACTGGGCAAGTTTTATTTTGATCATTTGTTT
ATTAATCGTATCCTCTGCGCTCTAACTTTAATAAATTGCAACCATTTCTA
ACCCTGGAATTTTTACTCAGTGCATGCCCTTGGATTATGTTTAATGTTGA
ACATTTCCTTTTGTGGTACCATTTGGTCTTGGTTTTCATTGCCTGTTAAT
GCCACACAGGAACTGACATTAGGGATTGTACTCGTCAATAAACATATATT
GTACGGCTAAAACAAAATAGCACAAAAACTAAGNTAGGACTCAAAATCAT
TTGATAAAACCTTAAAAATTTATGTTTAGCTTTAACTGACTTTTGTGACG
GAATAAGCAATAAAAAAGTGCTCTTTGCTTTTGTTTTTCGAAATTCAGGG
ATGAAGGTGTAAGGAAATCGTATTTAGAACTTTGAAATTTGTATATAACA
ATTTCAAATGAGAAAAACACAAAATCTAATTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGAGGAAAA
AATTTCAACAGATTTGAAATTATAATTCGCAACTTATTGGAAGTTTTCAT
CCCAAAATACTCAAGAATCGTGATTTTAGACTGAAAAAACCGTCTTTGAC
GAAAATTAGTTTTCACGTTTTTGCCAAAAGTGTAAAAAACACTTACTTAA
ATCAGATACTTGGAAATATAGAAAATAGAGCAAATTTTATGGATTTTCTA
ATACTTAATAAGAAAATGGAGCCAATTTTATGGATTTTCCGATACATATG
ACTAAATAACGAGAAAAAATCCTGGATTTTCCAAAACATTTTTCAAATTT
CTCAGAATTTCCAAATGAAAAAAAAATCCAAAAAAGCTTTGGGTCCCCGG
GGGGGGGGGGGGAAAGGGTTTTTTGGATTTTTTTTTCAATTGGAAATCCT
GAGAAATTTGAAAAATGTTTCGAAAATCCAGGATTTTTCAATTGTTTTTG
TATTGAAAATCCAGGAATTAGAAAAAAATATTTTGCCTCTCAATTTTTCA
ACCCCCCCCCCCCCCGGGGGGGAAAGGGTTTTTTTTGGAACGCCACAAAA
AGAAATTGGGCTCTTCCAGAAAAAAATTGTATAGCAGGGGATGGACGACA
GGAATTTTCAGATAAAAGGAGCACTTGGAAATCCAGTTAATTTTAAAAGT
GCTTGGAAATTCTACAATTTTTAAAATTTTGAATAAAGAGATTTTTCCAC
CAAAAATTTGATTTTGTATTAGAAATCCAGGATTTTTCAATTGTTTTTGT
ATTGAAAATCCAGGAATTAGAAAAAAATATTTTGCCTCTCAATTTTTCAA
CCACCCCCCCCCTGTGATGGACTTGGAAAAGCAGATTGCCTAGTGCTCAA
CTACTAAAATTTTATGGTGTACTTAGTTTTGCCAGAAACACCCACAAAAT
AAAATAGCAGAGAGAATTTTTTAAGGGATCCACTGGATGTTTTGTATGTT
TTTTGACGAAAAACAATTTTGACCCAATTTTACAGAGCTAACCGTTATAC
AGCATTTCCTATCATATAACTGCGAGAAAGTAAGAATTTTTTTTCCCGAA
GCTCAACCAGCTATTTATGTTTTTAAAATTTTTTACATTAAAAGCAAGTT
TGGATAGTAATCCGTGAAAAAGAATAAACGTAAATCCACTTTTATGATCC
AATTTTTAGGAAGAGCCGTCTTTTTATGAACATCCAACCCTAATCAAAGA
TTTTTTTCTATTCCATCCCATTTCTCTGTGTGGACAATGTCAGTACAATA
CAGTGTAATTCATAAAATACTACCAACAGGTGAGGGAATTGAAATTGATT
GCACTGTCTGAGATGGTACTGTAACTGGTGAATTCTAAAGCTTTGGTAGT
TACTGAGTTGTGTAGATTTCTCTTCGTTTTGAGAGTTTTTGGGAGACATA
AATGGCTCATCTTCTAATGATTTTTATATTCTTTTTACAGGTTAAAGAAT
AAATTTGGACATGTTGTCATCTTGGCTGGTATTAAATTTTGGAAGAACGA
TGTCGTGATGGACAAGCTAAATAAAGTTCAATTTTACTTCAGTGTTGTGG
ATATGGTTAAGCAATTTTTTCTACCTTTTGACAACCTTATCAATTTTTAT
CTAACTAATTTTTATTCCAATTAACAATAGGTGTGATTCAGACTCAGTCA
AGTTTGTCATGGAACTACTACAGACACTAGATTTACTGGGCAAGTTTTAT
TTTGATCATTTGTTTATTAATCGTATCCTCTGCGCTCTAACTTTAATAAA
TTGCAACCATTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024641XLOC_024641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040513-exon-sc0002447-1575043694:3636..3801TCONS_00040513-exon-sc0002447-1575043694:3636..3801Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1575043694:2706..2727TCONS_00040513-exon-sc0002447-1575043694:2706..2727Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1575043694:86..389TCONS_00040513-exon-sc0002447-1575043694:86..389Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1510915933:3636..3801TCONS_00040513-exon-sc0002447-1510915933:3636..3801Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1510915933:2706..2727TCONS_00040513-exon-sc0002447-1510915933:2706..2727Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1510915933:86..389TCONS_00040513-exon-sc0002447-1510915933:86..389Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1491911889:3636..3801TCONS_00040513-exon-sc0002447-1491911889:3636..3801Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1491911889:2706..2727TCONS_00040513-exon-sc0002447-1491911889:2706..2727Clytia hemisphaericaexon
TCONS_00040513-exon-sc0002447-1491911889:86..389TCONS_00040513-exon-sc0002447-1491911889:86..389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002447supercontigsc0002447:86..3801 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.837	8.40246	8.94701	13.6769	3.57741	2.38284	1.91778	2.13601	0.705769	0.000128123	0	0.299088	0	0	0	0.0763927	0	0	0	0	0	0	1.02091	1.52343	0.0672984	0.268708	0	0.196774	0.784334	0.64395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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