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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040511 ID=TCONS_00040511|Name=TCONS_00040511|organism=Clytia hemisphaerica|type=transcript|length=2480bp
ccaattttcaaagattgttaaAAGCAAGCCATTTGATGGTAATTTGAGGA
CCTTTTCCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTCGTCGTTG
TCCGGCGAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCGTTTCTCC
ACCGTCGTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcgtccgGCG
AAATCGTTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTCGTCGTCG
TCCGgcaaaatcaataaaatcgtTGTTCCGTCGGCATCATCCGGCGAAAT
TGTCGTCTCGTCGTCGTCcgcaaaatcaacaaaatcgttGTTCCGTCGGC
ATCATCCGTTTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGT
CGGCCTTATCCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAAT
GTTCTGCCGTCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCC
TTTGTCTGCCAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCC
AACAATACACCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCG
GAGTCAACGGATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCA
ACAATCTAAAGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGT
GGTGGTCGTTTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAA
GATCGATGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGC
AACAGGCAAAGGACATCAACACAATAATGACCATATTGAAAGAAATTACC
AACCGCCAACCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGT
TCTGAAAGCATCCTTCGTGTGCACagagttgttaaaagcaaactaacttt
tctGAATTATCAATTAGGTCTATAAGATCACAAAAgcgagtggtgagaaa
aattttgaccattttgctggtccccatgtgacgtcatcacttttggtggg
gcttgaaaatgaaagtgaaaattagaagctcatgtatggctcaaatgaaa
gatatttatccaaggattccaaaaaatatcataacatatacctgaaaatc
aatatttaagAAGCCataaaggaaaatagcttgaaatatgacgtcatcga
tgacgtcatcgacaataaaaaaatcgtcaaaatcgaaaaatttttgtttc
ttttgaaagaggaccatctagtgaacaaaaaatattgctacaaaaaatct
gaatttcTCCTTATAAGCCCCTGTCAGCAAATTTGTAGTTCATTAAACTC
GCCTGTGAAAGGTTAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTG
AGAATCAAGTCAAACGCATTTCACAGAATAATTTCCTATCAAATGAAATT
CAAGGTTTTccgtagtaatattttttgttcccaagcaggtcctctttcaa
atgaaacaaaaatttttcgatttcgacgattttttaattgccgatgacgt
catcgatgacgtcattttttgagctattttcctttatagcttctgaaatt
tgattttcaggtatatgttatgatattttttggaatccttggatagatat
ctttcatttgagccatatatgagcttctaattttcactttcattttcaag
ccctagcaaaagtgatgacgtcacatggggaccagcaaaatggtcaaaat
ttttctcaccactcctttttgtgatcttatagacctaattgatcatttaa
aaaagttagtttgcttttaacaactctgtgcacacgaagaacATTGTAGC
TCTCACTATCACCATGAGGTTGAAAATGAGctggaaaatattgaaaaagt
aaTTGAGGATACCAGACCAAACCTTTTCTTGCCTGGCGGTTACATGGAGG
AACTCTTGGGGAATGGGACAACCAACAGTTCAAAGTCGGAGGTTACAACT
GAAGAAACAGAGGCAATTGCCAAATCCGCCATCGAAACTATGAAGAGTAA
ATTCAGCCCGCAAGAACTAAAATACGGGAACATAAAAGGCACCGCCAGGA
TGAAGAAACTAAATGAggaatatttattgttctattCGAGAAAAATTCAT
CCTCCGCCCTGATTTTGAGTTCCTGGGACCCATTGAAACTAGAATTGGGA
TAAAATTGAATGCCCATAGGAAGAATATCAAATTATTAACACCGGAAATT
CCAAGTCAAAGCGCCAGCTCTTAAATCATATGGTGACTCAGTGATTGATC
CATTCTCTTAAATTATTCATCAGATTTTATTCACTACATAAATTGAATGC
ccataaattaaaaataaattctcaTGGATCAACGCAAAACACCATATGCT
TAAGTTCTGAGGCTATTTCTtaggaattttttatcaataatttaCTGATC
ATTGTaacctcattatttttttaaactatt Run BLAST on NCBI protein sequence of TCONS_00040511-protein >TCONS_00040511-protein ID=TCONS_00040511-protein|Name=TCONS_00040511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
QFSKIVKSKPFDGNLRTFSSLQTKIVAPLSSSLSGEIFSPSSLSGEIVSP
PSSSDEIVAPSSSSSGEIVVPSASSGEIVVSSSSGKINKIVVPSASSGEI
VVSSSSAKSTKSLFRRHHPFRRRPAKSTKSLFRRPYPAKSVFRCRLVPPM
FCRPVPLMFCCLVLLFLCLPTLQFIQRTLQPHANNTPHQVVVPLACLSLR
SQRIMLFLLEVVVVFFNNLKIKKAHVRRXSSRSGGRFLQQSKDQKSTREK
IDELSLELVRMRGVMEQQAKDINTIMTILKEITNRQPPMPVLHHSESHYV
LKASFVCTELLKAN Run BLAST on NCBI transcript from alignment at sc0002447:17251..19971+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040511 ID=TCONS_00040511|Name=TCONS_00040511|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at sc0002447:17251..19971+ (Clytia hemisphaerica)
ccaattttcaaagattgttaaAAGCAAGCCATTTGATGGTAATTTGAGGA
CCTTTTCCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTCGTCGTTG
TCCGGCGAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCGTTTCTCC
ACCGTCGTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcgtccgGCG
AAATCGTTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTCGTCGTCG
TCCGgcaaaatcaataaaatcgtTGTTCCGTCGGCATCATCCGGCGAAAT
TGTCGTCTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTCGT
CATCATCCGGCGAAACCGTCGTCTCGTCGTCGTCcggcaaaatcaacaaa
atcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCcggcaaaatcaa
caaaatcgttGTTCCGTCGGCATCATCCGTTTCGTCGTCGTCcggcaaaa
tcaacaaaatcgttGTTCCGTCGGCATCATCCGGCGAAATCGTCGTCTCG
TCGTCGTCcagcaaaatcaacaaaatcgttGTTCCGTCGGCATCATCCGT
TTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTCGGCCTTAT
CCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAATGTTCTGCCG
TCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCCTTTGTCTGC
CAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCCAACAATACA
CCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCGGAGTCAACG
GATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCAACAATCTAA
AGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGTGGTGGTCGT
TTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAAGATCGATGA
ACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGCAACAGGCAA
AGGACATCAACACAATAATGACCATATTGAAAGAAATTACCAACCGCCAA
CCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGTTCTGAAAGC
ATCCTTCGTGTGCACagagttgttaaaagcaaactaacttttctGAATTA
TCAATTAGGTCTATAAGATCACAAAAgcgagtggtgagaaaaattttgac
cattttgctggtccccatgtgacgtcatcacttttggtggggcttgaaaa
tgaaagtgaaaattagaagctcatgtatggctcaaatgaaagatatttat
ccaaggattccaaaaaatatcataacatatacctgaaaatcaatatttaa
gAAGCCataaaggaaaatagcttgaaatatgacgtcatcgatgacgtcat
cgacaataaaaaaatcgtcaaaatcgaaaaatttttgtttcttttgaaag
aggaccatctagtgaacaaaaaatattgctacaaaaaatctgaatttcTC
CTTATAAGCCCCTGTCAGCAAATTTGTAGTTCATTAAACTCGCCTGTGAA
AGGTTAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTGAGAATCAAG
TCAAACGCATTTCACAGAATAATTTCCTATCAAATGAAATTCAAGGTTTT
ccgtagtaatattttttgttcccaagcaggtcctctttcaaatgaaacaa
aaatttttcgatttcgacgattttttaattgccgatgacgtcatcgatga
cgtcattttttgagctattttcctttatagcttctgaaatttgattttca
ggtatatgttatgatattttttggaatccttggatagatatctttcattt
gagccatatatgagcttctaattttcactttcattttcaagccctagcaa
aagtgatgacgtcacatggggaccagcaaaatggtcaaaatttttctcac
cactcctttttgtgatcttatagacctaattgatcatttaaaaaagttag
tttgcttttaacaactctgtgcacacgaagaacATTGTAGCTCTCACTAT
CACCATGAGGTTGAAAATGAGctggaaaatattgaaaaagtaaTTGAGGA
TACCAGACCAAACCTTTTCTTGCCTGGCGGTTACATGGAGGAACTCTTGG
GGAATGGGACAACCAACAGTTCAAAGTCGGAGGTTACAACTGAAGAAACA
GAGGCAATTGCCAAATCCGCCATCGAAACTATGAAGAGTAAATTCAGCCC
GCAAGAACTAAAATACGGGAACATAAAAGGCACCGCCAGGATGAAGAAAC
TAAATGAggaatatttattgttctattCGAGAAAAATTCATCCTCCGCCC
TGATTTTGAGTTCCTGGGACCCATTGAAACTAGAATTGGGATAAAATTGA
ATGCCCATAGGAAGAATATCAAATTATTAACACCGGAAATTCCAAGTCAA
AGCGCCAGCTCTTAAATCATATGGTGACTCAGTGATTGATCCATTCTCTT
AAATTATTCATCAGATTTTATTCACTACATAAATTGAATGCccataaatt
aaaaataaattctcaTGGATCAACGCAAAACACCATATGCTTAAGTTCTG
AGGCTATTTCTtaggaattttttatcaataatttaCTGATCATTGTaacc
tcattatttttttaaactatt Coding sequence (CDS) from alignment at sc0002447:17251..19971+ >TCONS_00040511 ID=TCONS_00040511|Name=TCONS_00040511|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0002447:17251..19971+ (Clytia hemisphaerica)
caattttcaaagattgttaaAAGCAAGCCATTTGATGGTAATTTGAGGAC
CTTTTCCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTCGTCGTTGT
CCGGCGAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCGTTTCTCCA
CCGTCGTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcgtccgGCGA
AATCGTTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTCGTCGTCGT
CCGgcaaaatcaataaaatcgtTGTTCCGTCGGCATCATCCGGCGAAATT
GTCGTCTCGTCGTCGTCcgcaaaatcaacaaaatcgttGTTCCGTCGGCA
TCATCCGTTTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTC
GGCCTTATCCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAATG
TTCTGCCGTCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCCT
TTGTCTGCCAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCCA
ACAATACACCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCGG
AGTCAACGGATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCAA
CAATCTAAAGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGTG
GTGGTCGTTTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAAG
ATCGATGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGCA
ACAGGCAAAGGACATCAACACAATAATGACCATATTGAAAGAAATTACCA
ACCGCCAACCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGTT
CTGAAAGCATCCTTCGTGTGCACagagttgttaaaagcaaactaacaatt
ttcaaagattgttaaAAGCAAGCCATTTGATGGTAATTTGAGGACCTTTT
CCTCCCTTCAAACCAAAATCGTCGCTCCGTTGTCGTCGTCGTTGTCCGGC
GAAATCTTTTCTCCGTCGTCGTTGTCCGGCGAAATCGTTTCTCCACCGTC
GTCGTCCGACGAAATCGTTGCtccgtcgtcgtcgtcgtccgGCGAAATCG
TTGTTCCGTCGGCATCATCCGGCGAAATCGTTGTTTCGTCGTCGTCCGgc
aaaatcaataaaatcgtTGTTCCGTCGGCATCATCCGGCGAAATTGTCGT
CTCGTCGTCGTCcgcaaaatcaacaaaatcgttGTTCCGTCGGCATCATC
CGTTTCGTCGTCGTCcggcaaaatcaacaaaatcgttGTTCCGTCGGCCT
TATCCGGCGAAATCGGTGTTTCGCTGTCGTCTGGTTCCGCCAATGTTCTG
CCGTCCGGTTCCTCTAATGTTCTGTTGCCTGGTTTTGTTGTTCCTTTGTC
TGCCAACACTCCAGTTTATTCAACGAACGCTTCAACCCCACGCCAACAAT
ACACCACACCAAGTAGTTGTTCCTCTCGCATGTCTTTCACTCCGGAGTCA
ACGGATTATGTTGTTTCTTCTAGAAGTGGTGGTCGTTTTCTTCAACAATC
TAAAGATCAAAAAAGCACACGTGAGAAGATCNTCTTCAAGAAGTGGTGGT
CGTTTTCTTCAACAATCCAAAGATCAAAAAAGCACACGTGAGAAGATCGA
TGAACTTTCTTTGGAGTTGGTTAGAATGCGTGGGGTGATGGAGCAACAGG
CAAAGGACATCAACACAATAATGACCATATTGAAAGAAATTACCAACCGC
CAACCACCAATGCCAGTTCTTCATCATAGTGAGAGCCACTATGTTCTGAA
AGCATCCTTCGTGTGCACagagttgttaaaagcaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040511-exon-sc0002447-1491911889:17251..17570 | TCONS_00040511-exon-sc0002447-1491911889:17251..17570 | Clytia hemisphaerica | exon |
| TCONS_00040511-exon-sc0002447-1510915933:17251..17570 | TCONS_00040511-exon-sc0002447-1510915933:17251..17570 | Clytia hemisphaerica | exon |
| TCONS_00040511-exon-sc0002447-1575043694:17251..17570 | TCONS_00040511-exon-sc0002447-1575043694:17251..17570 | Clytia hemisphaerica | exon |
| TCONS_00040511-exon-sc0002447-1491911889:17812..19971 | TCONS_00040511-exon-sc0002447-1491911889:17812..19971 | Clytia hemisphaerica | exon |
| TCONS_00040511-exon-sc0002447-1510915933:17812..19971 | TCONS_00040511-exon-sc0002447-1510915933:17812..19971 | Clytia hemisphaerica | exon |
| TCONS_00040511-exon-sc0002447-1575043694:17812..19971 | TCONS_00040511-exon-sc0002447-1575043694:17812..19971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002447 | supercontig | sc0002447:17251..19971 + |
Blast
The following BLAST results are available for this feature:
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