TCONS_00040506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040506
Unique NameTCONS_00040506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040506 ID=TCONS_00040506|Name=TCONS_00040506|organism=Clytia hemisphaerica|type=transcript|length=363bp
ATCGCGTGCACCAGGAATGCGACCACAAAATGAACCACATAAGTGCTTTG
CGGTTTATTACGTCATTTTGCTTCGCATGGCCCGGCATACATTACCTTAA
TTTAGTGTATATGTGCCCTTAACTATTGTATGAGCCCGTTATACTACCCG
AAACTGAAAGATTTCCCGATAAAATTCCGAAATAAACCGATACCATTTGC
CGCTTTATGTGAACGCCATTCCATTCTTCTGTTCTTTCTTTCTACAAAAC
TACCAAACCGAGCAACATGGAGGACACGTCTACATTGGCTACACAATCAC
AATCACTAATAAATGATGAAGAAGAATTTGAGCAAGCTATGTTTACAGAA
CAGCAATGTATAC
Run BLAST on NCBI

transcript from alignment at sc0002445:1310..1672

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040506 ID=TCONS_00040506|Name=TCONS_00040506|organism=Clytia hemisphaerica|type=transcript|length=363bp|location=Sequence derived from alignment at sc0002445:1310..1672 (Clytia hemisphaerica)
GTATACATTGCTGTTCTGTAAACATAGCTTGCTCAAATTCTTCTTCATCA
TTTATTAGTGATTGTGATTGTGTAGCCAATGTAGACGTGTCCTCCATGTT
GCTCGGTTTGGTAGTTTTGTAGAAAGAAAGAACAGAAGAATGGAATGGCG
TTCACATAAAGCGGCAAATGGTATCGGTTTATTTCGGAATTTTATCGGGA
AATCTTTCAGTTTCGGGTAGTATAACGGGCTCATACAATAGTTAAGGGCA
CATATACACTAAATTAAGGTAATGTATGCCGGGCCATGCGAAGCAAAATG
ACGTAATAAACCGCAAAGCACTTATGTGGTTCATTTTGTGGTCGCATTCC
TGGTGCACGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024636XLOC_024636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040506-exon-sc0002445-1491911889:1310..1672TCONS_00040506-exon-sc0002445-1491911889:1310..1672Clytia hemisphaericaexon
TCONS_00040506-exon-sc0002445-1510915933:1310..1672TCONS_00040506-exon-sc0002445-1510915933:1310..1672Clytia hemisphaericaexon
TCONS_00040506-exon-sc0002445-1575043694:1310..1672TCONS_00040506-exon-sc0002445-1575043694:1310..1672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002445supercontigsc0002445:1310..1672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.691125	0.449304	0.260842	0	1.55337	1.22749	1.7771	1.94098	0	1.44279	0.466801	0.460285	0.459645	0	0.654072	1.40384	0.345883	0.531779	0.244894	0.512527	0	0	0	0	0	0	1.26356	0	0.255698	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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