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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040505 ID=TCONS_00040505|Name=TCONS_00040505|organism=Clytia hemisphaerica|type=transcript|length=551bp
ttagacttgaaaatgaaacacagttttcgaaatatattgtcaaatcaaat
taaattgttGGCTACATATTTATatatatttcttctttttagctCCTCGC
TCAGTATGAGAATGATAGGGACTATATTAGCCCCTCAGCTATCTACAACA
AGATTGTTGGCCAGTCCGTCCATACCAATTCGATTGATAAAGAAAAGTTT
TGGGTTGAAGTCCTGGATCTAATTAAATCTGATACCGAGgCAACCACTTG
GTTCCATCCCTTTACAGGATTTAAAAGAACAGATACTAAAGGGAAAGAAA
GAGGTGATATAATCCCAGCAGTGACAATCCATTCAGACAAGATGAAATGC
CTTCATTCAGTCACTTTCAAGGAAATGGAGCTTTACTTGGGGACATATGG
TAAGCGCGCTCACAACGTACATGTAAGATTCACCAACAAAAACGTTTGCT
GGCCAGATTGGAAGAAGGCAGACAAAAGCAACAAAAGTCGAGcatgCAAG
TTTCCTTGGTCAGAAATACCATTTGACATCGCAACTGAAATTGCTGAAGG
T Run BLAST on NCBI transcript from alignment at sc0002445:17213..19525+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040505 ID=TCONS_00040505|Name=TCONS_00040505|organism=Clytia hemisphaerica|type=transcript|length=2313bp|location=Sequence derived from alignment at sc0002445:17213..19525+ (Clytia hemisphaerica)
ttagacttgaaaatgaaacacagttttcgaaatatattgtcaaatcaaat
taaattgttGGCTACATATTTATatatatttcttctttttagctCCTCGC
TCAGTATGAGAATGATAGGGACTATATTAGCCCCTCAGCTATCTACAACA
AGATTGTTGGCCAGTCCGTCCATACCAATTCGATTGATAAAGAAAAGTTT
TGGGTTGAAGTCCTGGATCTAATTAAATCTGATACCGAGGTAAGTTTTTA
GAAACGGAAAGAAAGTCCATTCGCATTATATGTGCACTTTCATTTGATAT
TCTCAAGGTAATGAGAGAAGTCTCTTGAGAGTGGTCGCCACATGGTATCA
AATAAAGGTGCATTTTTTTACATCGAAACTTTTCGGTAATAAAATGTAAC
TAAAGTCAGTTCacaataagtgtgcactcttttttcttttacctataact
tttgaaggaattcttcaaaatttggtatcgttggagagatatttgtgagt
ggaacaatttaaaataaaaaagtttttaaaaagattctaaaaagatcttg
tagaaagctGCTATACCTTACATTTTCACTGGAgaaattctttgatctta
ggaggtcatcactgtgaagaaatttccctgaaatatttattcaatacaaa
gttaataagtgactgaccccaaaaaacagcagaaaacagcgtttttagac
gtcaataagcttataactttgtttgatatcttttgactgaatgattgttt
ttgagaaattttttcacagtgatggtgttcgatgatcaaggattcacttc
agtgaaaatgatagtcataccacttttctacaagatcttcatttttttct
tcatttttagaattttttcaaagaattctttatttcaaattgttccactc
acaaatatctctccaacgaaaccaaatttataaagattgaagccggaaaa
acagttttattgaaaatctactaaatattttttcatcaattttcacactg
atgcaaaattgCAATGCCCAAAGAAAAGCGGAGCCCGATTTTAGATGGTA
GATGTTATAGCTTGCATGGACCGGAAATGTACTCAAATAGTTTTTTTCTC
GAGAAAACTTTTGTCCCATTTCTTTTGTCTTTAGATTTTGCCGTCCTCAT
AAatattgttttatgttttcaggCAACCACTTGGTTCCATCCCTTTACAG
GATTTAAAAGAACAGATACTAAAGGGAAAGAAAGAGGTGATATAATCCCA
GCAGTGACAATCCATTCAGACAAGATGAAATGCCTTCATTCAGTCACTTT
CAAGGTTAGTCATTCAGATGATATATGATTTTTTAATTGACAGGTAGTTG
GTGTTAAAATAggtgtatttctttgtgtgtgaGTAAGGGAGTTGTAATAA
AAAATCTCATTTCCCCTTGCAGTTTAGCCAATGACATCACTATTTTGCTC
ATAAAAGGTTTGCCCGGGCCTAATCAGTCCTACTTCTTAAAGATATCTTG
AAATTACTGTTATATATTTGGTGAAAAATGTTCCTTTATATCCATTAGGA
AATGGAGCTTTACTTGGGGACATATGGTAAGCGCGCTCACAACGTACATG
TAAGATTCACCAACAAAAACGTTTGCTGGCCAGATTGGAAGAAGGCAGAC
AAAAGCAACAAAAGTCGAGGTAAGCCCTGATTAAAAGAATTTTGCCCTCA
AATCACTGTAACAAAATAACTAATTTACGGATTTATGGAAATGAGCTTTT
TGTTTTATCAATTATTGTGAATCGTAGAGACACGGTNTGTAAGATTCACC
AACAAAAACGTTTGCTGGCCAGATTGGAAGAAGGCAGACAAAAGCAACAA
AAGTCGAGGTAAGCCCTGATTAAAAGAATTTTACCCTCAAATCACTGTAA
CAAAATAACTAATTTACGGATTTATGGAAATGAGCTTTTTGTTTTATCAA
TTATTGTGAATCGTAGAGACACGGTGGGTATTAAACTTGGGCCTCCCAGG
CAGGAGTCAAAGTtcataaccactataccactacgcctaAAAATCATCTC
CTGATCGATATGTGGTTTAACTACCATTTTCAGATCAGTGAATTTTCCAT
CTTTGGGCATTAtaccactttgaaattttcaaaaaataatcaaatcttTT
TCGGAAATTATGTAGATACacttaaatttgatattttccaaaACCTGAAT
GGTGATGATTGATCTTAAAAGCGTAAACTAAAttgattacaatttttttt
tcagcatgCAAGTTTCCTTGGTCAGAAATACCATTTGACATCGCAACTGA
AATTGCTGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040505-exon-sc0002445-1491911889:17213..17451 | TCONS_00040505-exon-sc0002445-1491911889:17213..17451 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1510915933:17213..17451 | TCONS_00040505-exon-sc0002445-1510915933:17213..17451 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1575043694:17213..17451 | TCONS_00040505-exon-sc0002445-1575043694:17213..17451 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1491911889:18385..18516 | TCONS_00040505-exon-sc0002445-1491911889:18385..18516 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1510915933:18385..18516 | TCONS_00040505-exon-sc0002445-1510915933:18385..18516 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1575043694:18385..18516 | TCONS_00040505-exon-sc0002445-1575043694:18385..18516 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1491911889:18761..18881 | TCONS_00040505-exon-sc0002445-1491911889:18761..18881 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1510915933:18761..18881 | TCONS_00040505-exon-sc0002445-1510915933:18761..18881 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1575043694:18761..18881 | TCONS_00040505-exon-sc0002445-1575043694:18761..18881 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1491911889:19467..19525 | TCONS_00040505-exon-sc0002445-1491911889:19467..19525 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1510915933:19467..19525 | TCONS_00040505-exon-sc0002445-1510915933:19467..19525 | Clytia hemisphaerica | exon |
| TCONS_00040505-exon-sc0002445-1575043694:19467..19525 | TCONS_00040505-exon-sc0002445-1575043694:19467..19525 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002445 | supercontig | sc0002445:17213..19525 + |
Blast
The following BLAST results are available for this feature:
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