TCONS_00040502 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040502
Unique NameTCONS_00040502
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length858

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040502 ID=TCONS_00040502|Name=TCONS_00040502|organism=Clytia hemisphaerica|type=transcript|length=858bp
CTGAATTAtttaatagtcgaacgtgcgcaacgcactggcctcaacttcag
tatctgtCAAACTATTCGGAGGCCCAATTGTAGCAGTTGTAAAAAACTCA
TTGCAGgcttaaaatattgaatttttcgaaaaataaaaaaaatctcccAA
TGGAGAAGTGATTAAAATTTCAGTTAAATCgaccatttttgtctccaggc
TACCCTTgtgacacacagacattgtcagattctagctcaactagAGTTGA
GAATAATATCTGCAAAACTCGATGATTTATTTGATATTATGtctcaattt
cattttataaaaacaaactccaGAAAATTGTGTTTTCAAGTGTAGGTTCT
CTTATCTTTGTGCTTACTGTACTCGGCCTGTGTTCATGTAAACAGCACTT
TCCTTCTACCCTCGGGACATGAAAGACAGGGGGTTGGGATAAGCGTAAGT
GGGGTGAGTGGAAAAATATCTCAAAAGTTAATAAGTGCAGGGGTTtaaag
aatgtcctgggtggaaaattttcaaaaaattaattagcggctGGCCACTT
ACTAGGTACCCGAGAGGACAATGATTTGTAAAAGCcaatttttcgatatt
ttcaaaaataaacttaCCAAGATTTTCATAAAGAATGATGATCATAGTAG
AATTTTCCAATGACATTAGGGTGGTTGTTGGTTGTCCAGATCTTTAGAAA
ATGAATCTTCCCACTGTAACAGTCTTGACCACCATAAATACAAAGAGGAA
ATGTAGCTTTCTGGAATCCACAAAGCTTGTCATGTCCATCCAGTGACATT
GTTGAGTTGGGGCCCTAGTAATACAAGGGTTTGAATGTAACCTGGAAATC
AATAAACA
Run BLAST on NCBI

transcript from alignment at sc0002443:7757..8614

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040502 ID=TCONS_00040502|Name=TCONS_00040502|organism=Clytia hemisphaerica|type=transcript|length=858bp|location=Sequence derived from alignment at sc0002443:7757..8614 (Clytia hemisphaerica)
TGTTTATTGATTTCCAGGTTACATTCAAACCCTTGTATTACTAGGGCCCC
AACTCAACAATGTCACTGGATGGACATGACAAGCTTTGTGGATTCCAGAA
AGCTACATTTCCTCTTTGTATTTATGGTGGTCAAGACTGTTACAGTGGGA
AGATTCATTTTCTAAAGATCTGGACAACCAACAACCACCCTAATGTCATT
GGAAAATTCTACTATGATCATCATTCTTTATGAAAATCTTGGtaagttta
tttttgaaaatatcgaaaaattgGCTTTTACAAATCATTGTCCTCTCGGG
TACCTAGTAAGTGGCCagccgctaattaattttttgaaaattttccaccc
aggacattctttaAACCCCTGCACTTATTAACTTTTGAGATATTTTTCCA
CTCACCCCACTTACGCTTATCCCAACCCCCTGTCTTTCATGTCCCGAGGG
TAGAAGGAAAGTGCTGTTTACATGAACACAGGCCGAGTACAGTAAGCACA
AAGATAAGAGAACCTACACTTGAAAACACAATTTTCtggagtttgttttt
ataaaatgaaattgagaCATAATATCAAATAAATCATCGAGTTTTGCAGA
TATTATTCTCAACTctagttgagctagaatctgacaatgtctgtgtgtca
cAAGGGTAgcctggagacaaaaatggtcGATTTAACTGAAATTTTAATCA
CTTCTCCATTgggagattttttttatttttcgaaaaattcaatattttaa
gcCTGCAATGAGTTTTTTACAACTGCTACAATTGGGCCTCCGAATAGTTT
Gacagatactgaagttgaggccagtgcgttgcgcacgttcgactattaaa
TAATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024632XLOC_024632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040502-exon-sc0002443-1491911889:7757..8614TCONS_00040502-exon-sc0002443-1491911889:7757..8614Clytia hemisphaericaexon
TCONS_00040502-exon-sc0002443-1510915933:7757..8614TCONS_00040502-exon-sc0002443-1510915933:7757..8614Clytia hemisphaericaexon
TCONS_00040502-exon-sc0002443-1575043694:7757..8614TCONS_00040502-exon-sc0002443-1575043694:7757..8614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002443supercontigsc0002443:7757..8614 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.382657	0.278292	1.40791	1.75608	1.16503	1.10682	1.61646	1.42364	0.386985	0.394998	0.817795	0.284158	0.145425	0.31609	0.43457	0.382213	0.595379	0.0841232	0.193109	0.121617	0.189533	0.462758	0.0626781	0.129041	0.293458	0.314285	0.267136	0.303778	0.0606742	0.185452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040502 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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