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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040493 ID=TCONS_00040493|Name=TCONS_00040493|organism=Clytia hemisphaerica|type=transcript|length=1026bp
NNGCCTCGAAACAAAATCAACTATACGAAGAGGCTTACCACGAGTTGGAT
CATTCGTTCTTGTTGGACGTAGCAGGATCTCGCTTTGGTTGATTGTTGGA
CGTTGAGGATGGAGAGTGGATTGTAAATGTGATTGTAAATCAAGATTCTG
TTGGGTACCCACTAAAGGTGAAGGGTTTACAGCAGACGAAACGATGTGCG
GAAGGACggctgttgttgttgtagttTGGGGAATCCGCAGGAATGCTTGA
TCCAATCCAACAGACGTTTGGGGGATTCCCTGGCGGGCGGTTGATATGGG
CGCTAATGGTGGAGCTGAAGAAGAAGGGAGGGCGTTTGAAGATTGGgcgg
ttggagctcgagagggTGCAGCTTGTCTACTGGCTCTCAAACGAAGAATT
GCCAGTCGTTTGCTTTCAATTTCTCCAGCCAACCTTTTTTCTTCCTCTTC
GATATCATGCCTGAGGGTTTGTTCCTCATTTTCCAGTATAGATAGTTCTT
CCCTTAGCATATCAATTTGGCTATGGGCGGCAGGAAGTCCACTTCGCTCA
TCCAAAATGGCAGATCTTCGTTGGAGATGCCGTGAATCCCTTGTTTTTGG
ACTGGATTCAGGCGTAACGTTCGGTGGTGAGGCTGATAACCCTGTGCAAT
TTGGTCCAGGTATGCCAAAATCATGTTTTACCCTTTCAATGTGACACCCA
GGGCATTTTGAAGCTCTGGCAGATCTGGATTCAGAAGACTTTGGTGACAG
TTCAGTGGAAGACATATTGATGGATACAATTAAAGATTAGCAGCAATTAA
AATCAGTAAGATTGTGATGATAGTAGTTGATAAAGTTAGCAAATTATAAA
ACAGCAGTACAGcaaaatgaagaactgaaaaggACTGGCCAGGTTCCCTG
TTCTGCTATATGTATGGGAGTCTGAAAGAGAGGCTAAATGGGAAATCTGA
GCCCAACAGGGCAgacacaaatcaaaacaaactgatgtatctaaactctg
atatacCTACATATATCAGACACTAA Run BLAST on NCBI protein sequence of TCONS_00040493-protein >TCONS_00040493-protein ID=TCONS_00040493-protein|Name=TCONS_00040493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MSSTELSPKSSESRSARASKCPGCHIERVKHDFGIPGPNCTGLSASPPNV
TPESSPKTRDSRHLQRRSAILDERSGLPAAHSQIDMLREELSILENEEQT
LRHDIEEEEKRLAGEIESKRLAILRLRASRQAAPSRAPTAQSSNALPSSS
APPLAPISTARQGIPQTSVGLDQAFLRIPQTTTTTAVLPHIVSSAVNPSP
LVGTQQNLDLQSHLQSTLHPQRPTINQSEILLRPTRTNDPTRGKPLRIVD
FVSRX Run BLAST on NCBI transcript from alignment at sc0002441:3577..4602 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040493 ID=TCONS_00040493|Name=TCONS_00040493|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at sc0002441:3577..4602 (Clytia hemisphaerica)
TTAGTGTCTGATATATGTAGgtatatcagagtttagatacatcagtttgt
tttgatttgtgtcTGCCCTGTTGGGCTCAGATTTCCCATTTAGCCTCTCT
TTCAGACTCCCATACATATAGCAGAACAGGGAACCTGGCCAGTccttttc
agttcttcattttgCTGTACTGCTGTTTTATAATTTGCTAACTTTATCAA
CTACTATCATCACAATCTTACTGATTTTAATTGCTGCTAATCTTTAATTG
TATCCATCAATATGTCTTCCACTGAACTGTCACCAAAGTCTTCTGAATCC
AGATCTGCCAGAGCTTCAAAATGCCCTGGGTGTCACATTGAAAGGGTAAA
ACATGATTTTGGCATACCTGGACCAAATTGCACAGGGTTATCAGCCTCAC
CACCGAACGTTACGCCTGAATCCAGTCCAAAAACAAGGGATTCACGGCAT
CTCCAACGAAGATCTGCCATTTTGGATGAGCGAAGTGGACTTCCTGCCGC
CCATAGCCAAATTGATATGCTAAGGGAAGAACTATCTATACTGGAAAATG
AGGAACAAACCCTCAGGCATGATATCGAAGAGGAAGAAAAAAGGTTGGCT
GGAGAAATTGAAAGCAAACGACTGGCAATTCTTCGTTTGAGAGCCAGTAG
ACAAGCTGCAccctctcgagctccaaccgcCCAATCTTCAAACGCCCTCC
CTTCTTCTTCAGCTCCACCATTAGCGCCCATATCAACCGCCCGCCAGGGA
ATCCCCCAAACGTCTGTTGGATTGGATCAAGCATTCCTGCGGATTCCCCA
aactacaacaacaacagccGTCCTTCCGCACATCGTTTCGTCTGCTGTAA
ACCCTTCACCTTTAGTGGGTACCCAACAGAATCTTGATTTACAATCACAT
TTACAATCCACTCTCCATCCTCAACGTCCAACAATCAACCAAAGCGAGAT
CCTGCTACGTCCAACAAGAACGAATGATCCAACTCGTGGTAAGCCTCTTC
GTATAGTTGATTTTGTTTCGAGGCNN Coding sequence (CDS) from alignment at sc0002441:3577..4602 >TCONS_00040493 ID=TCONS_00040493|Name=TCONS_00040493|organism=Clytia hemisphaerica|type=CDS|length=765bp|location=Sequence derived from alignment at sc0002441:3577..4602 (Clytia hemisphaerica)
ATGTCTTCCACTGAACTGTCACCAAAGTCTTCTGAATCCAGATCTGCCAG
AGCTTCAAAATGCCCTGGGTGTCACATTGAAAGGGTAAAACATGATTTTG
GCATACCTGGACCAAATTGCACAGGGTTATCAGCCTCACCACCGAACGTT
ACGCCTGAATCCAGTCCAAAAACAAGGGATTCACGGCATCTCCAACGAAG
ATCTGCCATTTTGGATGAGCGAAGTGGACTTCCTGCCGCCCATAGCCAAA
TTGATATGCTAAGGGAAGAACTATCTATACTGGAAAATGAGGAACAAACC
CTCAGGCATGATATCGAAGAGGAAGAAAAAAGGTTGGCTGGAGAAATTGA
AAGCAAACGACTGGCAATTCTTCGTTTGAGAGCCAGTAGACAAGCTGCAc
cctctcgagctccaaccgcCCAATCTTCAAACGCCCTCCCTTCTTCTTCA
GCTCCACCATTAGCGCCCATATCAACCGCCCGCCAGGGAATCCCCCAAAC
GTCTGTTGGATTGGATCAAGCATTCCTGCGGATTCCCCAaactacaacaa
caacagccGTCCTTCCGCACATCGTTTCGTCTGCTGTAAACCCTTCACCT
TTAGTGGGTACCCAACAGAATCTTGATTTACAATCACATTTACAATCCAC
TCTCCATCCTCAACGTCCAACAATCAACCAAAGCGAGATCCTGCTACGTC
CAACAAGAACGAATGATCCAACTCGTGGTAAGCCTCTTCGTATAGTTGAT
TTTGTTTCGAGGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040493-exon-sc0002441-1491911889:3577..4602 | TCONS_00040493-exon-sc0002441-1491911889:3577..4602 | Clytia hemisphaerica | exon |
| TCONS_00040493-exon-sc0002441-1510915933:3577..4602 | TCONS_00040493-exon-sc0002441-1510915933:3577..4602 | Clytia hemisphaerica | exon |
| TCONS_00040493-exon-sc0002441-1575043694:3577..4602 | TCONS_00040493-exon-sc0002441-1575043694:3577..4602 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002441 | supercontig | sc0002441:3577..4602 . |
Blast
The following BLAST results are available for this feature:
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