TCONS_00040491 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040491
Unique Name	TCONS_00040491
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1393

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002441:13013..15040-

transcript sequence

>TCONS_00040491 ID=TCONS_00040491|Name=TCONS_00040491|organism=Clytia hemisphaerica|type=transcript|length=1393bp
GTGTTGTTCCAGTAGTCCAAACACTTTCAAAATCAGTAGCTGACAAAGGC
ATTCAAACAAGTGATACTATTCCTCGTCAACGACCAAAACCgacattgaa
aacaaaaaaaggtaattttatTGAAGTAAGTACCAAAATATACTGGTGAA
AAAATGATTTCTAGATTCTTTTGCACTCGATGAAGGGCTGACATCTTTTT
AACATCGTGTATTTGTCtaaattcttctttttcacCTGCTTCTAGATACA
AATAAAAATCAGGCCACTTGCAGTAAATTCGATAGAAATAAAGACCTTGA
CTCATTATTGGACATTTCAGCTATCACGTATGATGACCCTGATGACTTTT
CATTCCAACCATCTGAAGCAACGCTAGAAAACGATTCGCTTGAATTCGAT
GACGGCGGGGAGGACAAGAAATCAGAAACATTTGAAACTATTATCGCGTA
CCGAGAACAGTTAGACCTGCTTCTTCATCATTGCATGAAATGTGGTTCCA
CACTCATCGAGAAGAATGTTTTGCAGCACCAGGGGTCGCAATACACAGTT
GAGATGATTTGTTCAAAAGGATGCAAGAGCCGTTGGTCCAGTCAACCCCC
GCTGAAACCGCTGAAAGGAACAGGAAACCTTGACTTGACAGCCGCAATTA
CTTTTGCAGGGAtacctttccaaaaatttgaaagttttgcaTCAATCATG
AAGTTGAAGTTTTTCCAGGACTCGACATTCTATAGACTCAGGAAAGAATA
TGTTTCAGAAGTTATCAGGAGAACTTGGGAGAATGAACGTAGAAAGACAA
TTGACGAGCTTAAACAACGTGAAAATATCTCCTTACTTGGCGATGGACGG
TGCGATAGCCCTGGTCATTCAGCAAAGTATTTAATATACTCGTTCATGGA
GCCAGTGTCGGGGAAAGTGGTTGACACAACCGTCATAACTGTCACTGATG
TAAGATATAGGAATGATATGTTCACATTTCTTTTACCCAGATCATTACTG
TCTTATACttgacttttatttgatttgattttaatcTACAATTAAATATA
AATCATGACAAAATATCTCATTCGAATCAATTCCTCTACCATAATAATAC
ACTCGACATTTTCgataaattttaatttaataattAGATTTTGTCATCTT
TCAGGTGAAGAATTCTAACGCGATGGAAAAACAAGGTTTTATCGAGCTTC
TACTGGAGCTAAAAATGGTCGAAGGACTCAAAATCAAATCCGTATCTACG
GACATGCATACCCAAATTCGAAAGTTGATGAGAACCGACAAGCGGTTTAA
CGATATGGAACATTTTTTTGACCCGTGGCACGTGATTAAGAACTTGATCA
AAAAGATAAAAGCCAAAagcaaagaagaagaaattcatGAAAC

Run BLAST on NCBI

transcript from alignment at sc0002441:13013..15040-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040491 ID=TCONS_00040491|Name=TCONS_00040491|organism=Clytia hemisphaerica|type=transcript|length=2028bp|location=Sequence derived from alignment at sc0002441:13013..15040- (Clytia hemisphaerica)
GTGTTGTTCCAGTAGTCCAAACACTTTCAAAATCAGTAGCTGACAAAGGC
ATTCAAACAAGTGATACTATTCCTCGTCAACGACCAAAACCGACATTGAA
AACAAAAAAAGGTAATTTTATTGAAGTAAGTACCAAAATATACTGGTGAA
AAAATGATTTCTAGATTCTTTTGCACTCGATGAAGGGCTGACATCTTTTT
AACATCGTGTATTTGTCTAAATTCTTCTTTTTCACCTGCTTCTAGATACA
AATAAAAATCAGGCCACTTGCAGTAAATTCGATAGAAATAAAGACCTTGA
CTCATTATTGGACATTTCAGGTATGGCATCATATATAATTAACAAAATTA
TTCTTCACTGTTTCCGTTTTTATCAGTTTGAGTTATATTTATAATATTGA
AATTGTATGAATCACAATTGCTGCAGTTTAGCTTAAATAATTTCCAATTT
ACGATTAGCTAGCGCAGTCAAAATCTACGATTCTATTTTCAGCTATCACG
TATGATGACCCTGATGACTTTTCATTCCAACCATCTGAAGCAACGCTAGA
AAACGATTCGCTTGAATTCGATGACGGCGGGGAGGACAAGAAATCAGAAA
CATTTGAAACTATTATCGCGTACCGAGAACAGTTAGACCTGCTTCTTCAT
CATTGCATGAAATGTGGTTCCACACTCATCGAGAAGAATGTTTTGCAGCA
CCAGGGGTCGCAATACACAGTTGAGATGATTTGTTCAAAAGGATGCAAGA
GCCGGTAATTATTAATCGAATTTCTCATTAGGTATATTGCTTGACAAAGT
ATCAGTTAGTATCAGTTGTCGTAGATCCAATCCACATATTTCACTTCATT
TTCTAGCCTTAGTAAACCCTGGTGGCATCAAATGAACATGATGTTTTTTT
AATTATCATGTTATGACTCTTCTAATTTCAGTTGGTCCAGTCAACCCCCG
CTGAAACCGCTGAAAGGAACAGGAAACCTTGACTTGACAGCCGCAATTAC
TTTTGCAGGTATTGTATTTATTATAACTTATATTTGTTTAAAAAAGAATG
TTTTGAGGTCTTAAGACAGCTAAGCAAGTTTCTGCTAATTGTTTACTTCT
ATGTTTAACTTTTCCTGTTCTTCTTTCAGGGATACCTTTCCAAAAATTTG
AAAGTTTTGCATCAATCATGAAGTTGAAGTTTTTCCAGGACTCGACATTC
TATAGACTCAGGAAAGAATATGTTTCAGAAGTTATCAGGAGAACTTGGGA
GAATGAACGTAGAAAGGTAATTTTGATTAACAAAAATTTCTTTTACGCGT
GTAAAGTAACAAAAAAAAATGTTTGTTTATAAATAAAATGCTAGCTTCGT
TTGAAGCCTTTCCTTTTTTTTTAAATATACAGAAATAACATAAGTCTCCT
TCAAAAGTACTGACTTTATACTTTTGTTTAGACAATTGACGAGCTTAAAC
AACGTGAAAATATCTCCTTACTTGGCGATGGACGGTGCGATAGCCCTGGT
CATTCAGCAAAGTATTTAATATACTCGTTCATGGAGCCAGTGTCGGGGAA
AGTGGTTGACACAACCGTCATAACTGTCACTGATGTAAGATATAGGAATG
ATATGTTCACATTTCTTTTACCCAGATCATTACTGTCTTATACTTGACTT
TTATTTGATTTGATTTTAATCTACAATTAAATATAAATCATGACAAAATA
TCTCATTCGAATCAATTCCTCTACCATAATAATACACTCGACATTTTCGA
TAAATTTTAATTTAATAATTAGATTTTGTCATCTTTCAGGTGAAGAATTC
TAACGCGATGGAAAAACAAGGTTTTATCGAGCTTCTACTGGAGCTAAAAA
TGGTCGAAGGACTCAAAATCAAATCCGTATCTACGGACATGCATACCCAA
ATTCGAAAGTTGATGAGAACCGACAAGCGGTTTAACGATATGGAACATTT
TTTTGACCCGTGGCACGTGATTAAGAACTTGATCAAAAAGATAAAAGCCA
AAAGCAAAGAAGAAGAAATTCATGAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024622	XLOC_024622	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002441	supercontig	sc0002441:13013..15040 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.135534	0	0.0427614	0	0	0	0	0.317173	0.0408944	0.0963664	0.0607157	0	0	0	0.282009	0.14647	0.038922	0.104744	0.0603476	0.263758	0.115205	0.194017	0	0.0493646	0	0	0.164231	0	0.0618108	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00040491 vs. Swiss-Prot (Human)

BLAST of TCONS_00040491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00040491 (transcript) - C. hemisphaerica