TCONS_00040489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040489
Unique NameTCONS_00040489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040489 ID=TCONS_00040489|Name=TCONS_00040489|organism=Clytia hemisphaerica|type=transcript|length=359bp
ATGTtttaaagaattgattttacattttgtttCTCTGTACCAAAAGTAAG
ACTTCTAAGTAAGGTATTCTACTgattttaagcgattttaatacTAAAAC
CTTTCGTTTCATCATTTCAGAACTGGTCAAACCAACCAATCTCAAAACTA
TCATATAATTACAACTGGTCAAAGCAACCAACCAAATTATCATACTCTTA
CAACTGGTCAATCAAATCTATCACTTTGGAACGACCAAACCAATACATTT
GATTTGCCCCAGACGAATCATGGAAATTCATCAAATGGGTATCAAAATCG
GAATTTCATAACGCCAACGTCGGGGACTGCAGCTTCTGCATCGAAAACCC
AAATGAGGT
Run BLAST on NCBI

transcript from alignment at sc0002441:28447..29619+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040489 ID=TCONS_00040489|Name=TCONS_00040489|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0002441:28447..29619+ (Clytia hemisphaerica)
ATGTtttaaagaattgattttacattttgtttCTCTGTACCAAAAGTAAG
ACTTCTAAGTAAGGTATTCTACTgattttaagcgattttaatacTAAAAC
CTTTCGTTTCATCATTTCAGAACTGGTCAAACCAACCAATCTCAAAACTA
TCATATAATTACGTAAGTTGACATCCTTTAAAGTATTTTGAGGGGGTGCA
GGAGGTATGTTTGGCAGTATGTTGGATTGCACTATACAATGGGTGTTAGG
ATGATTTTGGAGATTTGGAGAGTTCTGCCTATTTAATTCTGATTATCTTG
GGGATTTTAAGTTTTACAAAAGTTCGACTTTCAAGTATTCTAATGATTTT
AGGCAATTTTAATACTAAAACctttcatttcatcatttcaGAACTGGTCA
AAGCAACCAACCAAATTATCATACTCTTACGTAAGTTAACATCCTTTACT
GTATATATTGGGTTTGAAGAATTTAGAGAGCTCTGGTGATATTATCTCTG
ATTATTTTGGAGATTTTTCCTTTTTACAAAAGCTTTAAAACTTCAGGTAT
TCTACAGTTTTTATGCAATCTTTAAACTGAAACCCTCCTTCATTTCAGAA
CTGGTCAATCAAATCTATCACTTTGGAACGACCAAACCAATACGTAAGTT
GATATGATCTCCCTAAAACATATTTTCtaagttcaaaaattgatggCATA
ATTGGGGATCTTGGGCtattatatatttaaaaaagaattgttgTTTAGTG
TATATGTAATAGAAAAATTTTAGTCGTAAATTATACAAACACCAACGCAT
AAAGTATTCAACTCCTTTCCGTCTAGATTTGATTTGCCCCAGACGAATCA
TGGAAATTCATCAAATGGGTATGTATTATTGCCTTTGCCCTCCTCCAAGC
TATAAATGATTAAGTTTTATAGTAAAGAATAAGAAACGTTATAATGTAAT
TAAATTTACTACATGTTAGAATTAATGACTTATTTTCTGTCGTTTATATT
GAACTTTTTACTGTAGACTGTAGTTTGTAGCAAAACACATTAAATGTAAC
AAAAGAAAGGGATCAGCATCACATATTCAAGGAATTTTTTCACTGTATCT
AGGTATCAAAATCGGAATTTCATAACGCCAACGTCGGGGACTGCAGCTTC
TGCATCGAAAACCCAAATGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024621XLOC_024621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040489-exon-sc0002441-1491911889:28447..28608TCONS_00040489-exon-sc0002441-1491911889:28447..28608Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1510915933:28447..28608TCONS_00040489-exon-sc0002441-1510915933:28447..28608Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1575043694:28447..28608TCONS_00040489-exon-sc0002441-1575043694:28447..28608Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1491911889:28838..28876TCONS_00040489-exon-sc0002441-1491911889:28838..28876Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1510915933:28838..28876TCONS_00040489-exon-sc0002441-1510915933:28838..28876Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1575043694:28838..28876TCONS_00040489-exon-sc0002441-1575043694:28838..28876Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1491911889:29045..29089TCONS_00040489-exon-sc0002441-1491911889:29045..29089Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1510915933:29045..29089TCONS_00040489-exon-sc0002441-1510915933:29045..29089Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1575043694:29045..29089TCONS_00040489-exon-sc0002441-1575043694:29045..29089Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1491911889:29273..29314TCONS_00040489-exon-sc0002441-1491911889:29273..29314Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1510915933:29273..29314TCONS_00040489-exon-sc0002441-1510915933:29273..29314Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1575043694:29273..29314TCONS_00040489-exon-sc0002441-1575043694:29273..29314Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1491911889:29549..29619TCONS_00040489-exon-sc0002441-1491911889:29549..29619Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1510915933:29549..29619TCONS_00040489-exon-sc0002441-1510915933:29549..29619Clytia hemisphaericaexon
TCONS_00040489-exon-sc0002441-1575043694:29549..29619TCONS_00040489-exon-sc0002441-1575043694:29549..29619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002441supercontigsc0002441:28447..29619 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.267798	0.261999	4.46541	3.63647	6.68979	5.97823	4.5761	2.55404	2.2866	4.0362	3.07364	2.94718	0.702545	0.929655	1.77553	0.85546	1.0057	0.622404	0	0.760072	0	0.246548	2.53939	7.02567	0	0.692232	0.262517	0.267463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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