|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040488 ID=TCONS_00040488|Name=TCONS_00040488|organism=Clytia hemisphaerica|type=transcript|length=1257bp
GTTTGAAAATGAAGTACATCTTTTTCTAATGATTATCATAACCtgttcta
aaattttgaatattgtttTCATCTGGTTCATATGCATATGTCCCAGTCCT
GGGATCATATATATAAAATCTTACTCATCTGAATGTTTTTCGATTGACCG
TTCAGAATAACAATAAGGCGGCCCATCACACCCAAGAAAGGGCGGGGGGT
TTCGGGGGTCTTAAAGGTAGGATGTTTTTCtacgcaaatcaaaatattat
tgcTTTTCCTCGTGACAAAACGGCATGATTTGATTGGTTGCGAAATTTGG
GAGAAATTAAATCTGATCAACGGCGCCGAAATGGTAGCGTTAGCTACGGG
CAATCATTCGGATAAAAAAAACTCAACAAGTAACAAGCAGACAAACACAG
AAAACTTACaaacagaaaatagaaaaatagaatTAAACTTTGCAAATAAT
GACAGATAATCCAGCTCAACACAAGGTTAGTAATGGACAATTTAGCATGT
ACAAATTTAATTgtatttgacaacttttttgcATTGTTTTTCAACAGCAG
AACAGTGCAGTCGTCACAGTAGTGATTGCATGCACACACATATGCAAAGC
ACtatgcatgaaaaaatgctttcaTTGTATAAGTTTACCAGGatgaaaag
acatttaatttacatttgaaactttttcattctatatatatttgatttta
tttttttatagctATTTTGCACATGTAATACAACATGCAGTCGAagagat
gggaataaggagagAAAGGATGGAAAAAAGAACACTGGCTGTCCATGCAA
AACAAGGAGAGACCAATGTACGGCATTATGTAAATGTGGAAGGAAATCTT
CAAAAGGGATTGTAAAAAATCCATGTAAAAATGGTCGTCCATCACCGGCT
TCTGATGAAATGGTTGTCTCTAACAATAAAGCACAGTCTGAGCCTGCCCC
AAGTGCAAACCCAAATGGTTGGATCACTCAGAGTGAGGAACTTGATGCAG
AAAGCGTATCCAGgtaatcttatttttttgaaaaatggcttcttcatttt
ttatgtgCATCTATTATGAATTTTTTATCTAGATAATTTAAAATCCTCCT
ATCtatactgtaaaaattatcCTGTGCCCTATTAGGACCCCTAGCGGTTT
AAGTGAATGCATGAATTTGGAATCTTTGCGTGAACCTGAAAATCTGTTtt
cattgcgtgaatgcgtgaattcaCCAAATTGTTTGTGTGGAATTTGCTGT
TCCCCCG Run BLAST on NCBI transcript from alignment at sc0002441:18192..20804+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040488 ID=TCONS_00040488|Name=TCONS_00040488|organism=Clytia hemisphaerica|type=transcript|length=2613bp|location=Sequence derived from alignment at sc0002441:18192..20804+ (Clytia hemisphaerica)
GTTTGAAAATGAAGTACATCTTTTTCTAATGATTATCATAACCtgttcta
aaattttgaatattgtttTCATCTGGTTCATATGCATATGTCCCAGTCCT
GGGATCATATATATAAAATCTTACTCATCTGAATGTTTTTCGATTGACCG
TTCAGAATAACAATAAGGCGGCCCATCACACCCAAGAAAGGGCGGGGGGT
TTCGGGGGTCTTAAAGGTAGGATGTTTTTCtacgcaaatcaaaatattat
tgcTTTTCCTCGTGACAAAACGGCATGATTTGATTGGTTGCGAAATTTGG
GAGAAATTAAATCTGATCAACGGCGCCGAAATGGTAGCGTTAGCTACGGG
CAATCATTCGGATAAAAAAAACTCAACAAGTAACAAGCAGACAAACACAG
AAAACTTACaaacagaaaatagaaaaatagaatTAAACTTTGCAAATAAT
GACAGATAATCCAGCTCAACACAAGGTTAGTAATGGACAATTTAGCATGT
ACAAATTTAATTgtatttgacaacttttttgcATTGTTTTTCAACAGCAG
AACAGTGCAGTCGTCACAGTAGTGATTGCATGCACACACATATGCAAAGC
ACtatgcatgaaaaaatgctttcaTTGTATAAGTTTACCAGGatgaaaag
acatttaatttacatttgaaactttttcattctatatatatttgatttta
tttttttatagctATTTTGCACATGTAATACAACATGCAGTCGAagagat
gggaataaggagagAAAGGATGGAAAAAAGAACACTGGCTGTCCATGCAA
AACAAGGAGAGACCAATGTACGGCATTATGTAAATGTGGAAGGAAATCTT
CAAAAGGGATTGTAAAAAATCCATGTAAAAATGGTCGTCCATCACCGGCT
TCTGATGAAATGGTTGTCTCTAACAATGTATGGATTACatattcatttat
tttcaaagggaatttcatttttagggtTTGAGGctacaaatttaatttta
agactTAACTGTAGTAACAAACCTAAAAGCAGTTGGTCGAAACATTTACG
TGGGAAAAATTATAAGTTGCTTATTGCTATTGGCTATTGGCCAAAATAAC
TTTAAAAGGAAATTGAAGCAGCTGGCTAAAATGCTaggataaaaaatatt
ttggcaaGTTTCAAATTGGTATATCTATTGCTGCACTACTTAGGTTTAAA
AACTTTCTGTTACAAAATTAGCCAAGAAAATTTACAGAGCTGAGGGAGCG
TCTCCAaatgttgtttcaattttttcgtttcaaattgtttcatgaaACGA
TTTAAAAGGAAGTTCAAACGAAGTTCAAACGAAGCTCAAACGAAATGCAT
AATTAGTTCTAATTTAAAGATAATTATCTAGTATTATCTTTGAGTTTTTT
CTATTTCGTTTCATTTCGTTTAGAGAAACTTCTCACTTAAAAATTTGTGC
AACGGATAGGATAGGGAGTTCTCGTTTAATTTCACATATGCACGCTTTTT
TTAGGAATATATCTTAATGACTGAACTTTATTTTCAACAGAATGTTTTGG
TTGAAGATCAATCCAaagaaatatgtttttcttacTGATCGGGGCTATCA
GCTAACAGGGATATAATTAGTGCAACAATTTTAACAGGTCTTAAAGGTGT
TACCGACTCAATTTGTAATTAATTACCAACTCAGTTGTAATTAATTACGG
TATTCCCATATATGAATTATATTGAAGTAATTTGCAAAGTGTTTCGGGTT
GTTATGTCGGAAAGTACCTTCGCAGCCTTATACcataatttatatttttt
atcagaacCAGGTTTAAAAGAATTCTTAAATCGAGGGCAAAAGATATTAG
AAAACTTGTCAAGCttgaaagcaagaaacTTCAGAAACTGAATCCCTTTA
AACATCGAAAAAATATTACGCATTTTGAGGAAGTAAGAACTATCTATTGT
TGTAGTAACAAAATGAGACTATTGCTAAAAATCctaaaaagttttgaatg
acATGAAATccagagaaaaatttatttcgtttcaccattcgtttcaaaat
attatcttttttcagttcaattatCTTATTTTCTTAAGTAATTAAAGTTA
ATCAGACATCATTATCTGAATATATTCGAAACGAAGTCGAAACGAAGTCG
AAACGAAAGCTAAACGAAACATAAACGAAGCTttcgtttcattttcgttt
aaaaatgaaacaatatttggagaCGCTCCCTAACTATCAGGTAAATTACC
TTTAGTGATATTTGTTTCTTTACCTTTTTATAGAAAGCACAGTCTGAGCC
TGCCCCAAGTGCAAACCCAAATGGTTGGATCACTCAGAGTGAGGAACTTG
ATGCAGAAAGCGTATCCAGgtaatcttatttttttgaaaaatggcttctt
cattttttatgtgCATCTATTATGAATTTTTTATCTAGATAATTTAAAAT
CCTCCTATCtatactgtaaaaattatcCTGTGCCCTATTAGGACCCCTAG
CGGTTTAAGTGAATGCATGAATTTGGAATCTTTGCGTGAACCTGAAAATC
TGTTttcattgcgtgaatgcgtgaattcaCCAAATTGTTTGTGTGGAATT
TGCTGTTCCCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040488-exon-sc0002441-1491911889:18192..19118 | TCONS_00040488-exon-sc0002441-1491911889:18192..19118 | Clytia hemisphaerica | exon |
| TCONS_00040488-exon-sc0002441-1510915933:18192..19118 | TCONS_00040488-exon-sc0002441-1510915933:18192..19118 | Clytia hemisphaerica | exon |
| TCONS_00040488-exon-sc0002441-1575043694:18192..19118 | TCONS_00040488-exon-sc0002441-1575043694:18192..19118 | Clytia hemisphaerica | exon |
| TCONS_00040488-exon-sc0002441-1491911889:20475..20804 | TCONS_00040488-exon-sc0002441-1491911889:20475..20804 | Clytia hemisphaerica | exon |
| TCONS_00040488-exon-sc0002441-1510915933:20475..20804 | TCONS_00040488-exon-sc0002441-1510915933:20475..20804 | Clytia hemisphaerica | exon |
| TCONS_00040488-exon-sc0002441-1575043694:20475..20804 | TCONS_00040488-exon-sc0002441-1575043694:20475..20804 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002441 | supercontig | sc0002441:18192..20804 + |
Blast
The following BLAST results are available for this feature:
|
