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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040487 ID=TCONS_00040487|Name=TCONS_00040487|organism=Clytia hemisphaerica|type=transcript|length=1687bp
gtttttggatttttatattcttataaaaaacatgtatgtgtAGGAGGAAT
GGTaaagcttaaaatattttattcaaaacaagaaCAGTGTGGACCTGAGA
AGGAACAGCATCAGGTGACAGATAACATTTAAAATTATTTGATCGAATAT
GGTCTTCACAGAAATGGTTTGAACAAACCCCATATCCAACTTTGTTCCTT
GCCACAGGTATTGTCTCCATGTTCATTGCGTCCAACCATTGTTTACACTT
CGCATCATCCTTTGGAAGGGCAAAGTATGACAATTCAGGCTTTTTCTTCT
TAGTATTGGAGCACTTCGGGTATACACAATACATTCTGATCACTTAATCA
TCACCAAAAAACACATCTTTGCAAAGCTTATTGTGTAAGAAAAGCTAACA
TTTTTTCGCTAAACTtgaactttcactttcgttttgttgtttacattttt
gcGCGGGAAAGTTATATTACGAGTGTAGAGGCCAGCTCTGGTTCGAACAG
TCTAGAATCCGCGCTCTTCtcctaaaaaaaaatctttgcttggagtTGAT
TTGCGGGTTTATGGAGAATCAGTATCGGCTTCAGAACTCCCAATGAGCCC
TGGttgtgttggtttcagtcagacggagacgccattttgttttcagagga
atttttcgatatctctacagcaactagcagtaagttttatgttctttaAA
TATGTTGTTAGGGGTTTTTAGACCAATATAGTCTGATTTCCTAAAGATCA
CAAACAAGCGAGNCCCCCCggaggggcactcgatttcgaaacgacggtat
gtgctgcccaaaatctgcttttcaaaatcgtacccttacagtgcagttca
atatggctgaaaaggtaccttttcagtgcattttctcttgatttacccaa
ccattatagtgcactatatttctcagctgtaaatctgcatGAAAGAAGAa
gtttgggaaattttctgtttcaaagaaaaactgagaaaattattcttgtc
agctgtaattatcagacaatagaaacttattcaaacaaacaagaagtaaa
aacctttcagcattttgggatgctgaaaaccCCCACCCTttagcgcggca
catgacgtaagccagatcatatgagtgcctcCCCCCCTAACCTGATAGCA
GCTGTGGAGTTTTCTTAACAcgacacgctgaagctctaaaaaatttttgt
gaaaatgctGCTCAAGAAGCAACCACACCAATGGTTTCATTAAGAAGATG
CGGAAACTGAAGATATGCACTGGAGATGATGTTTACCTTGTCTTATACAA
GGATGGTCTCAAGAGTGACTCAACAGTTTTCGACAAACTTGGACTTGGAT
GTCAAGAATGCGGTGCAGAATGGAGAGGTCCGATGGTTATTGCTTTAGAT
TCAAAATGGATAGGCGGTCAACGTGTCAATCCAGATGGCAAAAATTGTGA
CCGATGGAATCATGCCAAATGTCTTGGTTTGGAATTTGTTCAAAACGTTA
AGTCAGTAAAATGGTTTTTCCCGATCCATCGAACAAAGCCACCTAAAAGA
TATTTAAAGAAGGCTCTTGCTGAAATGAACAAAAAGCAAAAACCTTTGAT
AGAAAatccaaaaacaacaacaacgaaaaaaccattaaaaaaaaCGTCGA
AAAAATAATATGTGTAAATTGTAAAACTGTAATTTAT Run BLAST on NCBI protein sequence of TCONS_00040487-protein >TCONS_00040487-protein ID=TCONS_00040487-protein|Name=TCONS_00040487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MRKLKICTGDDVYLVLYKDGLKSDSTVFDKLGLGCQECGAEWRGPMVIAL
DSKWIGGQRVNPDGKNCDRWNHAKCLGLEFVQNVKSVKWFFPIHRTKPPK
RYLKKALAEMNKKQKPLIENPKTTTTKKPLKKTSKK Run BLAST on NCBI transcript from alignment at sc0002441:15316..17060+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040487 ID=TCONS_00040487|Name=TCONS_00040487|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at sc0002441:15316..17060+ (Clytia hemisphaerica)
gtttttggatttttatattcttataaaaaacatgtatgtgtAGGAGGAAT
GGTaaagcttaaaatattttattcaaaacaagaaCAGTGTGGACCTGAGA
AGGAACAGCATCAGGTGACAGATAACATTTAAAATTATTTGATCGAATAT
GGTCTTCACAGAAATGGTTTGAACAAACCCCATATCCAACTTTGTTCCTT
GCCACAGGTATTGTCTCCATGTTCATTGCGTCCAACCATTGTTTACACTT
CGCATCATCCTTTGGAAGGGCAAAGTATGACAATTCAGGCTTTTTCTTCT
TAGTATTGGAGCACTTCGGGTATACACAATACATTCTGATCACTTAATCA
TCACCAAAAAACACATCTTTGCAAAGCTTATTGTGTAAGAAAAGCTAACA
TTTTTTCGCTAAACTtgaactttcactttcgttttgttgtttacattttt
gcGCGGGAAAGTTATATTACGAGTGTAGAGGCCAGCTCTGGTTCGAACAG
TCTAGAATCCGCGCTCTTCtcctaaaaaaaaatctttgcttggagtTGAT
TTGCGGGTTTATGGAGAATCAGTATCGGCTTCAGAACTCCCAATGAGCCC
TGGttgtgttggtttcagtcagacggagacgccattttgttttcagagga
atttttcgatatctctacagcaactagcagtaagttttatgttctttaAA
TATGTTGTTAGGGGTTTTTAGACCAATATAGTCTGATTTCCTAAAGATCA
CAAACAAGCGAGNCCCCCCggaggggcactcgatttcgaaacgacggtat
gtgctgcccaaaatctgcttttcaaaatcgtacccttacagtgcagttca
atatggctgaaaaggtaccttttcagtgcattttctcttgatttacccaa
ccattatagtgcactatatttctcagctgtaaatctgcatGAAAGAAGAa
gtttgggaaattttctgtttcaaagaaaaactgagaaaattattcttgtc
agctgtaattatcagacaatagaaacttattcaaacaaacaagaagtaaa
aacctttcagcattttgggatgctgaaaaccCCCACCCTttagcgcggca
catgacgtaagccagatcatatgagtgcctcCCCCCCTAACCTGATAGCA
GCTGTGGAGTTTTCTTAACAcgacacgctgaagctctaaaaaatttttgt
gaaaatgctGCTCAAGAAGCAACCACACCAATGGTTTCATTAAGAAGATG
CGGAAACTGAAGATATGCACTGGAGATGATGTTTACCTTGTCTTATACAA
GGATGGTCTCAAGAGTGACTCAACAGTTTTCGACAAACTTGGACTTGGAT
GTCAAGAATGCGGTGCAGAATGGAGAGGTCCGATGGTTATTGCTTTAGAT
TCAAAATGGATAGGCTGTCAACGTGNAATGGAGAGGTCCGATGGTTATTG
CTTTAGATTCAAAATGGATAGGCGGTCAACGTGTCAATCCAGATGGCAAA
AATTGTGACCGATGGAATCATGCCAAATGTCTTGGTTTGGAATTTGTTCA
AAACGTTAAGTCAGTAAAATGGTTTTTCCCGATCCATCGAACAAAGCCAC
CTAAAAGATATTTAAAGAAGGCTCTTGCTGAAATGAACAAAAAGCAAAAA
CCTTTGATAGAAAatccaaaaacaacaacaacgaaaaaaccattaaaaaa
aaCGTCGAAAAAATAATATGTGTAAATTGTAAAACTGTAATTTAT Coding sequence (CDS) from alignment at sc0002441:15316..17060+ >TCONS_00040487 ID=TCONS_00040487|Name=TCONS_00040487|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0002441:15316..17060+ (Clytia hemisphaerica)
ATGCGGAAACTGAAGATATGCACTGGAGATGATGTTTACCTTGTCTTATA
CAAGGATGGTCTCAAGAGTGACTCAACAGTTTTCGACAAACTTGGACTTG
GATGTCAAGAATGCGGTGCAGAATGGAGAGGTCCGATGGTTATTGCTTTA
GATTCAAAATGGATAGGCGGTCAACGTGTCAATCCAGATGGCAAAAATTG
TGACCGATGGAATCATGCCAAATGTCTTGGTTTGGAATTTGTTCAAAACG
TTAAGTCAGTAAAATGGTTTTTCCCGATCCATCGAACAAAGCCACCTAAA
AGATATTTAAAGAAGGCTCTTGCTGAAATGAACAAAAAGCAAAAACCTTT
GATAGAAAatccaaaaacaacaacaacgaaaaaaccattaaaaaaaaCGT
CGAAAAAATAAATGCGGAAACTGAAGATATGCACTGGAGATGATGTTTAC
CTTGTCTTATACAAGGATGGTCTCAAGAGTGACTCAACAGTTTTCGACAA
ACTTGGACTTGGATGTCAAGAATGCGGTGCAGAATGGAGAGGTCCGATGG
TTATTGCTTTAGATTCAAAATGGATAGGCGGTCAACGTGTCAATCCAGAT
GGCAAAAATTGTGACCGATGGAATCATGCCAAATGTCTTGGTTTGGAATT
TGTTCAAAACGTTAAGTCAGTAAAATGGTTTTTCCCGATCCATCGAACAA
AGCCACCTAAAAGATATTTAAAGAAGGCTCTTGCTGAAATGAACAAAAAG
CAAAAACCTTTGATAGAAAatccaaaaacaacaacaacgaaaaaaccatt
aaaaaaaaCGTCGAAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040487-exon-sc0002441-1491911889:15316..16692 | TCONS_00040487-exon-sc0002441-1491911889:15316..16692 | Clytia hemisphaerica | exon |
| TCONS_00040487-exon-sc0002441-1510915933:15316..16692 | TCONS_00040487-exon-sc0002441-1510915933:15316..16692 | Clytia hemisphaerica | exon |
| TCONS_00040487-exon-sc0002441-1575043694:15316..16692 | TCONS_00040487-exon-sc0002441-1575043694:15316..16692 | Clytia hemisphaerica | exon |
| TCONS_00040487-exon-sc0002441-1491911889:16751..17060 | TCONS_00040487-exon-sc0002441-1491911889:16751..17060 | Clytia hemisphaerica | exon |
| TCONS_00040487-exon-sc0002441-1510915933:16751..17060 | TCONS_00040487-exon-sc0002441-1510915933:16751..17060 | Clytia hemisphaerica | exon |
| TCONS_00040487-exon-sc0002441-1575043694:16751..17060 | TCONS_00040487-exon-sc0002441-1575043694:16751..17060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002441 | supercontig | sc0002441:15316..17060 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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