TCONS_00040486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040486
Unique NameTCONS_00040486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040486 ID=TCONS_00040486|Name=TCONS_00040486|organism=Clytia hemisphaerica|type=transcript|length=1099bp
CTGATGGTCCACTACAGTGACAAATCTGACCCTGAATCATCTAGTTCGTC
TAATGAATCATGGGAAACATTGAGTACAAGCTCACTGCATTACTCTAATG
ACACATCTTCTGATAGTGATGCATCAAGCAGCAATGAAAACGAAGATAGC
ACACATGATGGTGATGAACAACAACAGTGCCTGCCATATCAATTTGAGCC
TAGGCGCTCACCCAAAAAATCATCATGTTCTTCCTCTTCGAACGAACCAG
CATCAAGTCAATCAAGTGAAGATGATAATTCTGTTGCTGGTGGCTGTGCT
GCTCCATCTGTCAcagaaaaaattgcaaaaagtaGATCGGACACCAAAAA
GTGGTGTTTGTGTACACATTGTCAAACAATGCCAACTCTCCAATAATGTG
TTTGTTGCGTGGAGCTTAGTGCAACTAAGGAAATTCTCGACAGTGAAGAT
CTAGcaTGTATTACCTACCATCCGAGCTTTGAAGCCGTGTGTCTTAACAA
GGATGTCCTTTGGACAGCTTTAGTAAGCTTGAAAGATCGTGAGAATGCTG
TGATTCCCGAATCAAAGGAAAAGACCCCTTTGAGaACCTGGAGATATGCA
GCCTATCGCCAGTTTTGTTGGTGGGTCCACCGGAACCTACAAAAGAACGT
CAGACGAGTGCTGCCATCGTGTGCTGCGTGCAGAATAAAGGCCGAATTTG
AAGAAGACGATGTTGATAATTACACTGGGTTTAAAGGCCATGATCCAGAA
GTTGACGAACTATTCTATGCGTTTGCCCTATTATAAATTCTAGATAAATA
TTCTAGATAGACTCATATATTTCACTTAAAACTCCAATAGCAGTAGCATT
GAAATCTACAACAAAGAAGATCTTCAAATAGGATAATATGTCCAGATTTC
AAAATCCTTAgtaacaaaatatgaaattttcaaaagaaacgtTACTTTGC
TTTACAcaactttttacaaaatgtaCATAATAGTTTATATTGTCTTATAG
TTAACCTCATGTTTGGTTCACTTACTAAACCTACTACGTTCAATCCTCAA
TCGAATGAGTTTATTTTTGTCGTCTCTCTGAGTCGGAGCCATTCTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00040486-protein

>TCONS_00040486-protein ID=TCONS_00040486-protein|Name=TCONS_00040486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
LMVHYSDKSDPESSSSSNESWETLSTSSLHYSNDTSSDSDASSSNENEDS
THDGDEQQQCLPYQFEPRRSPKKSSCSSSSNEPASSQSSEDDNSVAGGCA
APSVTEKIAKSRSDTKKWCLCTHCQTMPTLQ
Run BLAST on NCBI

transcript from alignment at sc0002441:10239..11952+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040486 ID=TCONS_00040486|Name=TCONS_00040486|organism=Clytia hemisphaerica|type=transcript|length=1714bp|location=Sequence derived from alignment at sc0002441:10239..11952+ (Clytia hemisphaerica)
CTGATGGTCCACTACAGTGACAAATCTGACCCTGAATCATCTAGTTCGTC
TAATGAATCATGGGAAACATTGAGTACAAGCTCACTGCATTACTCTAATG
ACACATCTTCTGATAGTGATGCATCAAGCAGCAATGAAAACGAAGATAGC
ACACATGATGGTGATGAACAACAACAGTGCCTGCCATATCAATTTGAGCC
TAGGCGCTCACCCAAAAAATCATCATGTTCTTCCTCTTCGAACGAACCAG
CATCAAGTCAATCAAGTGAAGATGATAATTCTGTTGCTGGTGGCTGTGCT
GCTCCATCTGTCAcagaaaaaattgcaaaaagtaGATCGGACACCAAAAA
GTGGTGTTTGTGTACACATTGTCAAACAATGCCAACTCTCCAATAATGTG
TTTGTTGCGTGGAGCTTAGTGCAACTAAGGAAATTCTCGACAGTGAAGAT
CTAGGTATAAATGTAACAATCAATAGGCACCAAACTATATGGAAAAATTT
CATGTTAATTTGTGTTTAGTTGTAGGGAGGTGAAAGAAGTGTGCAAAATG
TAGCTACCCCTCGTTTTGCCAAGTTTTCTCTAGTTCTAAGAATTTCGTCA
ATTTTTTAACTTAGAAATATGATTTTAGGATGATAAAAAACCAGACTTTT
ATATGAATTGCAGACTAAGGAAATCTAATCTTAATTAGCTCTAAAAGACC
CTTGATTTTGTATTtcatgtttcaattaaattgaattgaattgaatatat
caatgtatttcatttttttttatttatttatagcaTGTATTACCTACCAT
CCGAGCTTTGAAGCCGTGTGTCTTAACAAGGATGTCCTTTGGACAGCTTT
AGTAAGCTTGAAAGATCGTGAGAATGCTGTGATTCCCGAATCAAAGGAAA
AGACCCCTTTGAGGTGAATATCTTATTCTTTCACATAAATTAATCGATTG
ATGTTCTAGGATCGAAGCCGTGAACATGACTTAAAGATATCTAATCAAGT
atctttaattttgtatttttaaaaacaaaaatttcaaacatgttcataaa
aataaaattagtaATAATATCTAGTGTGCTAATAATAAAACCATTTCTCC
tcacaaaaaatatataataccAAAATTTACTAGGTTAGAAGGAGCTGTTC
CTCAACAATATATTTAAAAAGCTTTcaattgtttttgattttattataga
ACCTGGAGATATGCAGCCTATCGCCAGTTTTGTTGGTGGGTCCACCGGAA
CCTACAAAAGAACGTCAGACGAGTGCTGCCATCGTGTGCTGCGTGCAGAA
TAAAGGCCGAATTTGAAGAAGACGATGTTGATAATTACACTGGGTTTAAA
GGCCATGATCCAGAAGTTGACGAACTATTCTATGCGTTTGCCCTATTATA
AATTCTAGATAAATATTCTAGATAGACTCATATATTTCACTTAAAACTCC
AATAGCAGTAGCATTGAAATCTACAACAAAGAAGATCTTCAAATAGGATA
ATATGTCCAGATTTCAAAATCCTTAgtaacaaaatatgaaattttcaaaa
gaaacgtTACTTTGCTTTACAcaactttttacaaaatgtaCATAATAGTT
TATATTGTCTTATAGTTAACCTCATGTTTGGTTCACTTACTAAACCTACT
ACGTTCAATCCTCAATCGAATGAGTTTATTTTTGTCGTCTCTCTGAGTCG
GAGCCATTCTTTTT

Coding sequence (CDS) from alignment at sc0002441:10239..11952+

>TCONS_00040486 ID=TCONS_00040486|Name=TCONS_00040486|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0002441:10239..11952+ (Clytia hemisphaerica)
CTGATGGTCCACTACAGTGACAAATCTGACCCTGAATCATCTAGTTCGTC
TAATGAATCATGGGAAACATTGAGTACAAGCTCACTGCATTACTCTAATG
ACACATCTTCTGATAGTGATGCATCAAGCAGCAATGAAAACGAAGATAGC
ACACATGATGGTGATGAACAACAACAGTGCCTGCCATATCAATTTGAGCC
TAGGCGCTCACCCAAAAAATCATCATGTTCTTCCTCTTCGAACGAACCAG
CATCAAGTCAATCAAGTGAAGATGATAATTCTGTTGCTGGTGGCTGTGCT
GCTCCATCTGTCAcagaaaaaattgcaaaaagtaGATCGGACACCAAAAA
GTGGTGTTTGTGTACACATTGTCAAACAATGCCAACTCTCCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024618XLOC_024618Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040486-proteinTCONS_00040486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040486-exon-sc0002441-1491911889:10239..10692TCONS_00040486-exon-sc0002441-1491911889:10239..10692Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1510915933:10239..10692TCONS_00040486-exon-sc0002441-1510915933:10239..10692Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1575043694:10239..10692TCONS_00040486-exon-sc0002441-1575043694:10239..10692Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1491911889:11022..11151TCONS_00040486-exon-sc0002441-1491911889:11022..11151Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1510915933:11022..11151TCONS_00040486-exon-sc0002441-1510915933:11022..11151Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1575043694:11022..11151TCONS_00040486-exon-sc0002441-1575043694:11022..11151Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1491911889:11438..11952TCONS_00040486-exon-sc0002441-1491911889:11438..11952Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1510915933:11438..11952TCONS_00040486-exon-sc0002441-1510915933:11438..11952Clytia hemisphaericaexon
TCONS_00040486-exon-sc0002441-1575043694:11438..11952TCONS_00040486-exon-sc0002441-1575043694:11438..11952Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002441supercontigsc0002441:10239..11952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.504205	0.571923	0.384543	0.25427	1.04882	0.812122	0.0723477	0.0685832	0.236088	0.22745	0.684281	0.159095	0.554988	0.302856	0.421521	0.941484	0.540688	0.32475	0	0.209687	0.172817	0.229655	0.226992	0.259421	0	0.0653962	0.525123	0	0.069266	0.0698562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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