TCONS_00040485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040485
Unique NameTCONS_00040485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040485 ID=TCONS_00040485|Name=TCONS_00040485|organism=Clytia hemisphaerica|type=transcript|length=451bp
TTTACATCCAAATTTATTAACCCTTCTCTGTGCTGCttcctttttcattt
attatttagacaaaaaagaaatttttatatgaaaactgAATTGAACTATT
GATATCGCGCCGCACCTAAAgtaaattcacaaaaatttaataaagcgcca
attgagaaaatttgagttaaatcattaaaataaatacCAAATTATTAAAG
TTAAAATAGATGCTGAAAAATGTATCCAATCCAAAAGTTAATTTTGTGCT
TAAAGAATTTGGGCTACTGTTGGGTATCTAGGGGGTATGCCCCACGTGGC
AAGATTTCAATACGATAACATGCTATAGTAGTATATTAATTGCAGATGGG
AATCGATGGGAAGTAAAATTTCTTAGAACTTCTCTAAAAAACTGGCAGAG
AGACCAGCTAGTATCATGATACACAATATTTATAAAGGCAAGAAACATGG
A
Run BLAST on NCBI

transcript from alignment at sc0002440:14718..15168

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040485 ID=TCONS_00040485|Name=TCONS_00040485|organism=Clytia hemisphaerica|type=transcript|length=451bp|location=Sequence derived from alignment at sc0002440:14718..15168 (Clytia hemisphaerica)
TCCATGTTTCTTGCCTTTATAAATATTGTGTATCATGATACTAGCTGGTC
TCTCTGCCAGTTTTTTAGAGAAGTTCTAAGAAATTTTACTTCCCATCGAT
TCCCATCTGCAATTAATATACTACTATAGCATGTTATCGTATTGAAATCT
TGCCACGTGGGGCATACCCCCTAGATACCCAACAGTAGCCCAAATTCTTT
AAGCACAAAATTAACTTTTGGATTGGATACATTTTTCAGCATCTATTTTA
ACTTTAATAATTTGgtatttattttaatgatttaactcaaattttctcaa
ttggcgctttattaaatttttgtgaatttacTTTAGGTGCGGCGCGATAT
CAATAGTTCAATTcagttttcatataaaaatttcttttttgtctaaataa
taaatgaaaaaggaaGCAGCACAGAGAAGGGTTAATAAATTTGGATGTAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024617XLOC_024617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040485-exon-sc0002440-1491911889:14718..15168TCONS_00040485-exon-sc0002440-1491911889:14718..15168Clytia hemisphaericaexon
TCONS_00040485-exon-sc0002440-1510915933:14718..15168TCONS_00040485-exon-sc0002440-1510915933:14718..15168Clytia hemisphaericaexon
TCONS_00040485-exon-sc0002440-1575043694:14718..15168TCONS_00040485-exon-sc0002440-1575043694:14718..15168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002440supercontigsc0002440:14718..15168 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156733	0.183855	0	0.162396	1.04399	0.32498	1.77406	1.04462	0.274154	0.751449	0	0.987362	5.49462	4.00377	4.03272	26.2552	2.25521	0.617575	1.60995	2.75686	1.19475	2.70505	0.71867	1.14548	1.22766	0.467611	0.804083	0.42907	4.51325	2.98388
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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