TCONS_00040484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040484
Unique NameTCONS_00040484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040484 ID=TCONS_00040484|Name=TCONS_00040484|organism=Clytia hemisphaerica|type=transcript|length=874bp
cttttatatgaaatcagggtatagtgtagattcaaataagtttttatact
taCTTTATACAACATTTTAAGTCAGATACCAATTTTAAATTCAGTAAGAA
TTAAAAAGGGAGACCCACCCTCTCCTTTGTTAAGGCAGTTAACCTTAATT
GAGTGAGTCTCAAGTCCCATACAGCACTCTCACCAATTTGCAGTTTGTCA
TTTTCgtgttttcctttgttttcatcatgtttgtttacctttttcagatt
actcacatttcattttctaccattttgaatatatttcatattttcagtta
AATTCACATTTGGTCAGTGTTTTGTATATTAATATGTGTCAATTCAATTT
GTAATTCACTTTTTGTCATAATTTATATtagtttttcataaattatttct
ggtctgtattttatacaTTCTATTCTGCAGAATGTATAAAAAGTCACTTT
CAGTTTTGCACTTCAGAACAGTCAGAACAGTCAGAACAAAGAAAACTTCt
caaacaaataaacaacatTCAATCAGGAGACACCAGAAAATCCTGGAAAT
CCTTCAATAATCTtttcagaaagaaaaaagtAGATATCATCTCACATATC
ACAGATCCCACAGATAACTCTACCAAAACATCTGAATTTGATATTGCTGA
GGTTTTTAGGAAGAACCAAGAAAGTATCTTTAAAGGTAACCCAGTACACG
ACATTGAGCATGAAAATACTGTCAATCGCTGGTATAACTCTTTCAACAAC
TACCACAAGCCTATACAAATCTTCATCGAGAAAgctgaaataagaaaaaa
aattaaaaaactaaaaaacagaAAGTCACCAGGACCAGATGGAGTAACAA
ACATACTTATAAAGTACCTCGAAC
Run BLAST on NCBI

transcript from alignment at sc0002440:10413..11286

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040484 ID=TCONS_00040484|Name=TCONS_00040484|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0002440:10413..11286 (Clytia hemisphaerica)
GTTCGAGGTACTTTATAAGTATGTTTGTTACTCCATCTGGTCCTGGTGAC
TTtctgttttttagttttttaattttttttcttatttcagcTTTCTCGAT
GAAGATTTGTATAGGCTTGTGGTAGTTGTTGAAAGAGTTATACCAGCGAT
TGACAGTATTTTCATGCTCAATGTCGTGTACTGGGTTACCTTTAAAGATA
CTTTCTTGGTTCTTCCTAAAAACCTCAGCAATATCAAATTCAGATGTTTT
GGTAGAGTTATCTGTGGGATCTGTGATATGTGAGATGATATCTacttttt
tctttctgaaaAGATTATTGAAGGATTTCCAGGATTTTCTGGTGTCTCCT
GATTGAatgttgtttatttgtttgaGAAGTTTTCTTTGTTCTGACTGTTC
TGACTGTTCTGAAGTGCAAAACTGAAAGTGACTTTTTATACATTCTGCAG
AATAGAAtgtataaaatacagaccagaaataatttatgaaaaactaATAT
AAATTATGACAAAAAGTGAATTACAAATTGAATTGACACATATTAATATA
CAAAACACTGACCAAATGTGAATTtaactgaaaatatgaaatatattcaa
aatggtagaaaatgaaatgtgagtaatctgaaaaaggtaaacaaacatga
tgaaaacaaaggaaaacacGAAAATGACAAACTGCAAATTGGTGAGAGTG
CTGTATGGGACTTGAGACTCACTCAATTAAGGTTAACTGCCTTAACAAAG
GAGAGGGTGGGTCTCCCTTTTTAATTCTTACTGAATTTAAAATTGGTATC
TGACTTAAAATGTTGTATAAAGtaagtataaaaacttatttgaatctaca
ctataccctgatttcatataaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024616XLOC_024616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040484-exon-sc0002440-1491911889:10413..11286TCONS_00040484-exon-sc0002440-1491911889:10413..11286Clytia hemisphaericaexon
TCONS_00040484-exon-sc0002440-1510915933:10413..11286TCONS_00040484-exon-sc0002440-1510915933:10413..11286Clytia hemisphaericaexon
TCONS_00040484-exon-sc0002440-1575043694:10413..11286TCONS_00040484-exon-sc0002440-1575043694:10413..11286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002440supercontigsc0002440:10413..11286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.324891	0.196856	0.193358	0.335559	0.18603	0.161573	0.661111	0.594031	0.272516	0.0666533	0.206777	0.318018	0.143378	0.0386708	0.0398906	0	0.120149	0	0	0	0.103164	0.105401	0	0.118296	0.0572795	0	0	0	0.0592143	0.228058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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