TCONS_00040478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040478
Unique NameTCONS_00040478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040478 ID=TCONS_00040478|Name=TCONS_00040478|organism=Clytia hemisphaerica|type=transcript|length=539bp
CTCGACACAAACTTTATCATTGGAAGTGAATTCGGACTCTAAATTTAAAT
CGTCaattaacataaaaatgaaaaaaaattattattcaaCATGAATTGAA
GCACATTTGTTCCACACTTGATGTCCTTGTTCAGTATCCCATCTGAACGA
CAACACATATTCTCCAACGTCCAAATCCTCAGGCACCTTCACTAAATCAA
CAATCGAGAAgggaaaaattttctccgttccGTACAAATTGATCCCAAAT
CCACTCAAGCCTGGTCCTGAAGCGGGAAATTGCCNATCGAGAAgggaaaa
attttctccgttccGTACAAATTGATCCCAAATCCACTCAAGCCTGGTTC
TGAAGCGGGAAATTGCCTACCCATTAGACATTGGTGCGGGTCTAAGAAGC
CGCCTGTTTGACCCACGCACGCCGGGATTGGGTTTTTGGTCCATTGTGAT
TTAGGAGGGAAGGTACCGTTGTTTGTTCGGACTGCTGCTATCTCCCTCCT
AGACGTTTCGTCCTCACCCCATTGTATCCATTGATGATC
Run BLAST on NCBI

transcript from alignment at sc0002439:5308..5846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040478 ID=TCONS_00040478|Name=TCONS_00040478|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0002439:5308..5846 (Clytia hemisphaerica)
GATCATCAATGGATACAATGGGGTGAGGACGAAACGTCTAGGAGGGAGAT
AGCAGCAGTCCGAACAAACAACGGTACCTTCCCTCCTAAATCACAATGGA
CCAAAAACCCAATCCCGGCGTGCGTGGGTCAAACAGGCGGCTTCTTAGAC
CCGCACCAATGTCTAATGGGTAGGCAATTTCCCGCTTCAGAACCAGGCTT
GAGTGGATTTGGGATCAATTTGTACggaacggagaaaatttttcccTTCT
CGATNGGCAATTTCCCGCTTCAGGACCAGGCTTGAGTGGATTTGGGATCA
ATTTGTACggaacggagaaaatttttcccTTCTCGATTGTTGATTTAGTG
AAGGTGCCTGAGGATTTGGACGTTGGAGAATATGTGTTGTCGTTCAGATG
GGATACTGAACAAGGACATCAAGTGTGGAACAAATGTGCTTCAATTCATG
ttgaataataattttttttcatttttatgttaattGACGATTTAAATTTA
GAGTCCGAATTCACTTCCAATGATAAAGTTTGTGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024610XLOC_024610Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040478-exon-sc0002439-1491911889:5308..5846TCONS_00040478-exon-sc0002439-1491911889:5308..5846Clytia hemisphaericaexon
TCONS_00040478-exon-sc0002439-1510915933:5308..5846TCONS_00040478-exon-sc0002439-1510915933:5308..5846Clytia hemisphaericaexon
TCONS_00040478-exon-sc0002439-1575043694:5308..5846TCONS_00040478-exon-sc0002439-1575043694:5308..5846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:5308..5846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.44199	1.71568	1.63441	0.719519	1.03855	1.30779	8.80804	6.424	16.9302	25.7779	7.79979	6.39785	8.05186	5.99284	0	0	1.63779	0.906176	0.120041	0.105043	0	0	0.244841	1.04921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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