TCONS_00040463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040463
Unique NameTCONS_00040463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040463 ID=TCONS_00040463|Name=TCONS_00040463|organism=Clytia hemisphaerica|type=transcript|length=437bp
CTTACGCCCTCCTCGATAGCGGGAGCCAGTGTACACTCATAACAAAGAGC
CTTTGTCAATCACTCAAGTTGCCAGGAAAGTTAAAGAAAGTTTCCTTTGG
TACCATCAAAGACGAGGAGGAAATGCAGNAATCACTCAAGTTGCCAGGAA
AGGTAAAGAAAGTTTCCTTTGGTACCATCAAAGACGAGGAGGAAATGCAG
GCCAAGATTGTCAACTTAAAGTTATCCTCCACAGATGGAAGCTTCGTCTC
TCAAGTGAAGAATGTCTACTCTCTACATGAAGACAATTTCAAGGTTCCAG
GACAGACAGTACCAGTAACAGATGACCCTAAATGGGATTATATTCGAGAC
ATCGATCTTCCTCAAGTAGAATCGAGACAAGTTCAAGTCCTCATTGGTGC
CGACGTACCAGCAGCTCTACTTACCAAAGAAGTTCGA
Run BLAST on NCBI

protein sequence of TCONS_00040463-protein

>TCONS_00040463-protein ID=TCONS_00040463-protein|Name=TCONS_00040463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
YALLDSGSQCTLITKSLCQSLKLPGKLKKVSFGTIKDEEEMQXSLKLPGK
VKKVSFGTIKDEEEMQAKIVNLKLSSTDGSFVSQVKNVYSLHEDNFKVPG
QTVPVTDDPKWDYIRDIDLPQVESRQVQVLIGADVPAALLTKEVR
Run BLAST on NCBI

transcript from alignment at sc0002437:35601..36037

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040463 ID=TCONS_00040463|Name=TCONS_00040463|organism=Clytia hemisphaerica|type=transcript|length=437bp|location=Sequence derived from alignment at sc0002437:35601..36037 (Clytia hemisphaerica)
TCGAACTTCTTTGGTAAGTAGAGCTGCTGGTACGTCGGCACCAATGAGGA
CTTGAACTTGTCTCGATTCTACTTGAGGAAGATCGATGTCTCGAATATAA
TCCCATTTAGGGTCATCTGTTACTGGTACTGTCTGTCCTGGAACCTTGAA
ATTGTCTTCATGTAGAGAGTAGACATTCTTCACTTGAGAGACGAAGCTTC
CATCTGTGGAGGATAACTTTAAGTTGACAATCTTGGCCTGCATTTCCTCC
TCGTCTTTGATGGTACCAAAGGAAACTTTCTTTACCTTTCCTGGCAACTT
GAGTGATTNCTGCATTTCCTCCTCGTCTTTGATGGTACCAAAGGAAACTT
TCTTTAACTTTCCTGGCAACTTGAGTGATTGACAAAGGCTCTTTGTTATG
AGTGTACACTGGCTCCCGCTATCGAGGAGGGCGTAAG

Coding sequence (CDS) from alignment at sc0002437:35601..36037

>TCONS_00040463 ID=TCONS_00040463|Name=TCONS_00040463|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0002437:35601..36037 (Clytia hemisphaerica)
TCGAACTTCTTTGGTAAGTAGAGCTGCTGGTACGTCGGCACCAATGAGGA
CTTGAACTTGTCTCGATTCTACTTGAGGAAGATCGATGTCTCGAATATAA
TCCCATTTAGGGTCATCTGTTACTGGTACTGTCTGTCCTGGAACCTTGAA
ATTGTCTTCATGTAGAGAGTAGACATTCTTCACTTGAGAGACGAAGCTTC
CATCTGTGGAGGATAACTTTAAGTTGACAATCTTGGCCTGCATTTCCTCC
TCGTCTTTGATGGTACCAAAGGAAACTTTCTTTACCTTTCCTGGCAACTT
GAGTGATTNCTGCATTTCCTCCTCGTCTTTGATGGTACCAAAGGAAACTT
TCTTTAACTTTCCTGGCAACTTGAGTGATTGACAAAGGCTCTTTGTTATG
AGTGTACACTGGCTCCCGCTATCGAGGAGGGCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024607XLOC_024607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040463-exon-sc0002437-1491911889:35601..36037TCONS_00040463-exon-sc0002437-1491911889:35601..36037Clytia hemisphaericaexon
TCONS_00040463-exon-sc0002437-1510915933:35601..36037TCONS_00040463-exon-sc0002437-1510915933:35601..36037Clytia hemisphaericaexon
TCONS_00040463-exon-sc0002437-1575043694:35601..36037TCONS_00040463-exon-sc0002437-1575043694:35601..36037Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040463-proteinTCONS_00040463-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002437supercontigsc0002437:35601..36037 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40044	0.455216	1.40946	0.920252	0	0.165819	0.600161	0.561863	0.262249	0.162419	0.630591	0.103631	0.517437	0.429891	0.353429	0.284462	0.116811	0.119728	0	0.17309	0.300894	0.220148	0.178413	0	0	0	0.213364	0.227708	0.345417	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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