TCONS_00040461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040461
Unique NameTCONS_00040461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040461 ID=TCONS_00040461|Name=TCONS_00040461|organism=Clytia hemisphaerica|type=transcript|length=740bp
CCCAGGGATCAATCCTTGGCCCtctgtttttcaatatttatatctgtgac
ctctttttcatcattgaggATACTAAGGTTGCGAATTATGCGGCCGATAC
GACACACCCTATGTTAGTGCTCCTACCTGGATTGAAGTAAGTGGTAAACT
AAGCTCTGTAGCAGAAAAAATCTTCACATGGCTTTCGATTAATCAAATGG
TTGGTAATGCTGACAAATGTCAGCTAATAGTTAACATCATTGACGACTCG
CTCTATCTTAATATTAGAGAAGAAACTGTTTTCAATACCAAAACGTCAAA
GATTCTTGGAGTAACCTTCGATAATCTTTTGACGTTTGAATCGCATAAAG
AAAATCTTTGCAAGAAAGCTAGTTTGAAAATAACCGCCTTAGCCAGAATG
AGCACATATctcactttagaaaaaaagaaacgctCGATGAATGCTTTCAT
TAAATGCCACTTCAATTACTGTCCTCTCATATGGATGTTTCATAGCAGAG
CTCTAGAGGATAAAATCAACAATCTACATAAAAGATGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNATAGCAGAGCTCTAGAGGATAAAATCAA
CAATCTACATAAAAGATGCttgagaatcgtttactcagacTACAACTCAT
CATTCGATGATCTGTTGAAACTCGACAACGGTTCCACCTTCCATCAACGA
GCAATTCAATCCTTATCCACAGagctatttaaatcaaaac
Run BLAST on NCBI

protein sequence of TCONS_00040461-protein

>TCONS_00040461-protein ID=TCONS_00040461-protein|Name=TCONS_00040461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MVGNADKCQLIVNIIDDSLYLNIREETVFNTKTSKILGVTFDNLLTFESH
KENLCKKASLKITALARMSTYLTLEKKKRSMNAFIKCHFNYCPLIWMFHS
RALEDKINNLHKRXXXXXXXXXXXXXSRALEDKINNLHKRCLRIVYSDYN
SSFDDLLKLDNGSTFHQRAIQSLSTELFKSK
Run BLAST on NCBI

transcript from alignment at sc0002437:21750..22489

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040461 ID=TCONS_00040461|Name=TCONS_00040461|organism=Clytia hemisphaerica|type=transcript|length=740bp|location=Sequence derived from alignment at sc0002437:21750..22489 (Clytia hemisphaerica)
gttttgatttaaatagctCTGTGGATAAGGATTGAATTGCTCGTTGATGG
AAGGTGGAACCGTTGTCGAGTTTCAACAGATCATCGAATGATGAGTTGTA
gtctgagtaaacgattctcaaGCATCTTTTATGTAGATTGTTGATTTTAT
CCTCTAGAGCTCTGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCATCTTTTATGTAGATTGTTGATTTTATCCTCTAGAGCTCTGCTATG
AAACATCCATATGAGAGGACAGTAATTGAAGTGGCATTTAATGAAAGCAT
TCATCGagcgtttctttttttctaaagtgagATATGTGCTCATTCTGGCT
AAGGCGGTTATTTTCAAACTAGCTTTCTTGCAAAGATTTTCTTTATGCGA
TTCAAACGTCAAAAGATTATCGAAGGTTACTCCAAGAATCTTTGACGTTT
TGGTATTGAAAACAGTTTCTTCTCTAATATTAAGATAGAGCGAGTCGTCA
ATGATGTTAACTATTAGCTGACATTTGTCAGCATTACCAACCATTTGATT
AATCGAAAGCCATGTGAAGATTTTTTCTGCTACAGAGCTTAGTTTACCAC
TTACTTCAATCCAGGTAGGAGCACTAACATAGGGTGTGTCGTATCGGCCG
CATAATTCGCAACCTTAGTATcctcaatgatgaaaaagaggtcacagata
taaatattgaaaaacagaGGGCCAAGGATTGATCCCTGGG

Coding sequence (CDS) from alignment at sc0002437:21750..22489

>TCONS_00040461 ID=TCONS_00040461|Name=TCONS_00040461|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0002437:21750..22489 (Clytia hemisphaerica)
ttttgatttaaatagctCTGTGGATAAGGATTGAATTGCTCGTTGATGGA
AGGTGGAACCGTTGTCGAGTTTCAACAGATCATCGAATGATGAGTTGTAg
tctgagtaaacgattctcaaGCATCTTTTATGTAGATTGTTGATTTTATC
CTCTAGAGCTCTGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCATCTTTTATGTAGATTGTTGATTTTATCCTCTAGAGCTCTGCTATGA
AACATCCATATGAGAGGACAGTAATTGAAGTGGCATTTAATGAAAGCATT
CATCGagcgtttctttttttctaaagtgagATATGTGCTCATTCTGGCTA
AGGCGGTTATTTTCAAACTAGCTTTCTTGCAAAGATTTTCTTTATGCGAT
TCAAACGTCAAAAGATTATCGAAGGTTACTCCAAGAATCTTTGACGTTTT
GGTATTGAAAACAGTTTCTTCTCTAATATTAAGATAGAGCGAGTCGTCAA
TGATGTTAACTATTAGCTGACATTTGTCAGCATTACCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024605XLOC_024605Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040461-proteinTCONS_00040461-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040461-exon-sc0002437-1491911889:21750..22489TCONS_00040461-exon-sc0002437-1491911889:21750..22489Clytia hemisphaericaexon
TCONS_00040461-exon-sc0002437-1510915933:21750..22489TCONS_00040461-exon-sc0002437-1510915933:21750..22489Clytia hemisphaericaexon
TCONS_00040461-exon-sc0002437-1575043694:21750..22489TCONS_00040461-exon-sc0002437-1575043694:21750..22489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002437supercontigsc0002437:21750..22489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.88085	2.87887	7.17221	8.08195	4.86546	3.41756	4.46674	5.06629	1.84422	2.09218	3.45222	2.41713	3.76265	3.36869	2.25199	2.24974	2.68951	2.33422	1.91253	2.27295	4.40782	3.78108	1.26776	1.60187	4.77225	7.04232	3.57295	2.05323	4.12841	3.24885
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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