|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040456 ID=TCONS_00040456|Name=TCONS_00040456|organism=Clytia hemisphaerica|type=transcript|length=711bp
AATTTTCCTGCAGCAATCCAAATCTTTGGGGCCACTTTCATGGCCCTTCA
TTTTAAAACTATCATGGACGAGTATGGGTTCGTTCCTGTGCCATTAGTCA
TCGGAGCTTCTGGTACAACAAAGTCCACCATGGCCAAATTGGCTCTTGCA
TCTATTGGTGTTAAAGGAAATAAATTTGATCCGACTTATTCATCACTTGT
GAACCTTGTTTCGAAAACCCAAGTACCTTTTATTTGGGAGGATGCTGAAG
ATTTCAATTGCCTTGGTAAATTGGTGATGCTGATATATAATGATtCTGAA
CGAGAAAAGTATGAAGGGTCATCTGAAAGTCCACATACGATGCCGGTATG
CACTACCAACGGCACTTTCTTTGACAGTCTCCCTGAAGGAATACGCTACA
ACAGATTCGTCCAACGTACACTTTTGATACCGTTCAATGAATATGAACAC
CAAAAATTGGGTGTTATTGGAAAGTTGATGTTTTCGCATACGCTGACTAC
CGAGATGGGGCCGAAAGCTAGTGCCCTTTTCCCTCAGTTTTTGGAACTGG
AAGAggtgataaaatgaaaaatatcgaaaacgATCCCCTTATGAAGGGTT
TAGAGAAGACCCTTCTTGGAAAAGAACTGTTCCATGTGTCAGACTTGAGG
TCTGACAAGAACTATGCCTTAATGATGTTCTTCACTGGTAAGGTAGGTTG
TTTTACTTTCA Run BLAST on NCBI protein sequence of TCONS_00040456-protein >TCONS_00040456-protein ID=TCONS_00040456-protein|Name=TCONS_00040456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
NFPAAIQIFGATFMALHFKTIMDEYGFVPVPLVIGASGTTKSTMAKLALA
SIGVKGNKFDPTYSSLVNLVSKTQVPFIWEDAEDFNCLGKLVMLIYNDSE
REKYEGSSESPHTMPVCTTNGTFFDSLPEGIRYNRFVQRTLLIPFNEYEH
QKLGVIGKLMFSHTLTTEMGPKASALFPQFLELEEVIK Run BLAST on NCBI transcript from alignment at sc0002437:13911..20077+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040456 ID=TCONS_00040456|Name=TCONS_00040456|organism=Clytia hemisphaerica|type=transcript|length=6167bp|location=Sequence derived from alignment at sc0002437:13911..20077+ (Clytia hemisphaerica)
AATTTTCCTGCAGCAATCCAAATCTTTGGGGCCACTTTCATGGCCCTTCA
TTTTAAAACTATCATGGACGAGTATGGGTTCGTTCCTGTGCCATTAGTCA
TCGGAGCTTCTGGTACAACAAAGTCCACCATGGCCAAATTGGCTCTTGCA
TCTATTGGTGTTAAAGGAAATAAATTTGGTAAAATATTGCTTTACTATTA
TAAATTTGAAGAGAGATTTAAACTAAAGTTGATTCTACATGCTGCAAAAG
GTAGTAGGTGCTGCACTTGGATAATTATTATATATTGAATCAgattaaat
ttgtattattcttttaaaaaaatattgcattCTTTCTGGAAATGGAGTAa
ctaatttatttattatgtgTTTTTACCAGATCTTTATTTAGACTTTGAAC
TTCTTTTTGTAGATCCGACTTATTCATCACTTGTGAACCTTGTTTCGAAA
ACCCAAGTACCTTTTATTTGGGAGGATGCTGAAGATTTCAATTGCCTTGG
TAAATTGGTGATGCTGATATATAATGATGTAAGTTCAGTAATGATTCGAA
AATtattctctttttgttttgaaaggctTCCTGAGAGATTTAATACTGAG
gcgaaataatttttatttctagTTCTTCAGGctatttttctttacaaaaa
tcCACAACTGTTAATTTTTCACATTAGTTATTGTAAGTTTGTGTAAAAGA
GCTGTTAAGATTTATTCCTCAGCATTgataaaatgtgaaattttgaattc
aaagcACTATAAATTATCAAACTTCATCATAGGACCTGAAATTTTAGGTA
GAACCTTGAACTTCCCCCTGCACACTATGACGGTGTATTGCTTATTTATC
CATTTGTTAGGAAAtggaaagcaaaataaaaattagttcACACTTATCTT
GAATAGACTTTAACAAGCAATAACGTTTTGATACTTTTTGCTCTACCCAT
GAGTCACTATTTGGAGAATAACTGATCTATCAATTGACAGCTCTCTTAAA
ATATTAAAGTGTataaaaatgctcaaaatcaTAAATGGTACATGATGTAA
GATATTAGTCGAttaaaaattagaaagattAGATTAGAAAGATTTAGTAG
AATGACGTgggtttttgtattttcttttagtCTGAACGAGAAAAGTATGA
AGGGTCATCTGAAAGTCCACATACGATGCTGGTATGCACTACCAACGTCA
CTTTCTTTGACAGTCTCCCTGAAGGAATACGCTACAACAGGTAAGTTTGC
TATGTTGATGAAAGATATTCAGTCACTATGTTCGTAACAATATTGGGTTC
TTCAAAAGATTTATTAGTTGACCACTTCCTCAGGACAATCAAGAGGTCGT
GTAGgcgtttcttttttttaatatagACGATTGTAGTATGGTAAATTCTG
CCCAGATGAATGTGTCAATGCAGCAGAAagcaataagaaaaaaataatga
atcttTTTATCACTAGATACTTTTCTTTATTCAGATTCGTCCAACGTACA
CTTTTGATACCGTTCAATGAATATGAACGCCAAAAATTGGGTGTTATTGG
AAAGTTGATGTTCTCGCATACGCTGACTACCGAGATGGGGCCGAAAGCTA
GTGCCCTTTTCCCTCAGTTTTTGGAACTGGAAGAGGTgataaaactgaaa
aatatcgaaaacgATCCCCTTATGAAGGGTTTAGAGAAGACCCTTCTTGT
AAAAGAACTGTTCCATGTGTCAGACTTGAGGTCTGACAAGAACTATGCCT
TAATGATGTTCTTCACTGGTAAGGTAGGTTGTTTTACTTTCAGTCAACAG
TTTGAATCTAATTATTTTCTCATTTGCAATCTATCCCCTCCCTTGTGATC
GATATTCGGTCCTTTGATTTCAACTTTTATATAGCAAAAAAAGGTTCACT
TTACTAAGGTCTATTCGCTTTAAGAGCAGATGCACCCAAGAATCAGAAAT
CTGGAATCATGGGGGTCTTCACTCATCAGATTTACCTGAAATTTAGTTCA
CCAATACTAGGGGTCGGGTGGATCAGGCCTGCAAAATTTAAGCGCTGTAG
CTTATacagttggaaagatattagcatttgaaaaacgtgtaaaatacaga
ccagaatttaAAACCTTAATATCTCTTTTAACATTAATGATATTGATCGG
AAACTTGGCACAAtggttgaaaaaaatattcaattgaaaatttttgcacA
CGATGACTTGCGGTCTCATTTTCCAAAAAGGGTATTAAAAGTTTCCaaaa
tgttatacatttttaaaATCTACAGTCTATCTACTTTCTGAATCAAAAAG
AATTTCTGGACAAATCAACCTATTTAAAATAACAGCCGTTTAAAACACTG
CATTTTTTTTTACCTTAACAACACCTTAGTTACGGGTTGTTTCAGTTCTC
CTTGATGTTTACCAAAAACTGAACTAGAGACTTTTGTTTGAGTTTTAGGA
ATCATTTTAGCACAAAAATTGGTGgagtttgtaaaatttgtatGATAGTT
TGATAATAAATATATAGTGCTTTGAAGTCATCTCggaaaaaacatgataa
aagtAATAGTAATACAcagattcaaagaaaatttatttttaaacaattcg
GTCCGCGGGGAAAAATTGTACTGACTGTAGATTATAAAGTTATGAtgttt
ttctgagaaaaatacatCAGTACATTTATAGCTATCGTGTACTAGTAAGC
TTCCTATCCCACATTGTTGGTATAAATATTTGCTGGTAAAACTAATATAC
CGCAATTGCGTTTAGGAATTCAAATATAACTATCATAGTGACATAGACAA
GTGTGATATACAGAATAAAGACGACAACAANAAATTTCAGGCGAATTTTC
AGCTATAGCCTCACCTAAAACTTTTATGTTAATAATGAATTAATGAGTTA
ATAATTTTATGTTAATgcgtataaaatcaaaaaacaattttgcataCAAT
GCATTAAAATCAATAAGTAATTGAAGAGGGAATCTTCATACACAACTATT
TACTCAACTCCAttgagacacccctgtgtcaagaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTGTCAAGACCCGCCGCTGGATaaacaa
ttctttcaaaatcccaatggggatagaatttatatactttttgagtTCAA
AAATATAGTGGGATGGTTTCGAACGCAAtttcttaaatataatttttata
tggggatgaattcaaagtcaatttcccagtggggctgaaatgatagggta
tttttcaTTAGAGGATGaagtttttgctaaattttccagtgggttgtGGT
TccatgtgggaaaaagttccacaggggctgtgagacagggatgtattgaG
TTTCTTTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NtacaaattttacaaaattggccTGCAAATAATGCAAATAATGCTGAGGT
TGCGCGAAGTGTGGTTTGCACTTTCAACAGTTGTTGATCTGACTTAATTg
ttaaaattaaagatttaaaagaaaaatctagaacttgaaaaatctgtaaa
tcatAGAGTACAAAGAGAgctaattacacccctgtcacagtgttacagcc
ccggtggagcttctcccactatggggatgaaagtttNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTAATTCT
AAGGTGCGAAAAAGAAAAGCGGCACCTAGTTTGGTCAACAGAGGACACCT
CTTCTTTTTCCTGTCATCACGCTAACAGGCACAGGGGTCGTTGgacaata
taaaattttttaattaaaaaataatcttgtcAATCAAGCGATCAATCCTA
AAAAACACATTCTCATCTTGCtcccataaaattgaaatatttattttact
tttgccaaaTCAACTACAAGAAAATCTGCTCCTTACTTTTATCCCGACGT
AGAGattataatgtttttaaaaaacgaaattattacctttttttattgta
tttgatgattgtattttcgataaatttggcatgaaaatttgatattttca
tgaaaaatattttcgtttaaatttcaagacgaaaactttgtattttcttg
aaatacaaATGAAGAAAAGATAGTCATTCTGGAAACATGAAAGAtttcct
ttttaatgaaaaacgacaaaagaaattatccaccttttcgaagcaagaaa
tatttaaagattatcttttttcaagaacttaaagaaaaagaatcttttct
taaaactgTAAGGAAAAATCGATATTTCCGCAATCGTACGTTCGAAAACA
TTAAGTTTTCAAGGACAAGAAACTGGAAAGACATTTATTTCATGCAGTGT
TATTATATATTGAATCAgattaaatttgtattattcttttaaaaatatat
tgcaTTCTTTCTGGAAATGGAGtaattaatttatttattatgtgTTTTTA
CCAGATCTTTATTTAGACTTTAAACTTCTTTTTGTAGATCCGACTTATTC
ATCACTTGTGAACCTTGTTTCGAAAACCCAAGTACCTTTTCTTTGGGAGG
ATGCTGAAGATTTCAATTGCCTTGGTAAATTGGTGATGCTGATATATAAT
GATGTAAGTTCAGTAATGATTCGAAAATTATTCTCATTTTGTTTTGAAAG
GCTTCCTGAGAGATTTAATACTGAGGCGAAATAATTTTTATTTCTAGTTC
TTCAGGCTATTTTTCTTTACAAAAATCCACAACTGTTAATTTTTCACATT
AGTTATTGTAAGTTTGTGTAAAAGAGCTGTTAAGATTTATTCCTCAGCAT
TGATAAAATGTGAAATTTTGAATTCAAAGCACTATAAATTATCAAACTTC
ATCATAGGACCTGAAATTTTAGGTAGAACCTTGAACTTCCCCCTGCACAC
TATGACGGTGTATTGCTTATTTATCCATTTGTTAGGAAATGGAAAGCAAA
ATAAAAATTAGTGCACACTTATCTTGAATAGACTTTAACAAGCAATAACG
TTTTGATACTTTTTGCTCTACCCATGAGTCACTATTTGGAGAATAACTGA
TCTATCAATTGACAGCTCTCTTAAAATATTAAAGTGTataaaaatgctca
aaatcaTAAATGGTACATGATGCAAGATATTAGTCGAttaaaaattagaa
agattAGATTAGAAAGATTTAGTAAAATGACGTgggtttttgtattttct
tttagtCTGAACGAGAAAAGTATGAAGGGTCATCTGAAAGTCCACATACG
ATGCCGGTATGCACTACCAACGGCACTTTCTTTGACAGTCTCCCTGAAGG
AATACGCTACAACAGGTAAGTTTGCTATGTTGATGAAAAATATTCAGTCA
CTATGTTCGTAACAATATTGGGTTCTTCAAAAGATTTATTAGTTGACCAC
TTCATCAGGACAATCAAGAGGTCGTGTAGgcgtttcttttttttaatata
gACGATTGTAGTATGGTGAATTCTGCCCAGATGAATGTGTCAAAGCAATA
AGAAagcaataagaaaaaaatattgaatcttTTTATCACCAGATACTTTT
CTTTATTCAGATTCGTCCAACGTACACTTTTGATACCGTTCAATGAATAT
GAACACCAAAAATTGGGTGTTATTGGAAAGTTGATGTTTTCGCATACGCT
GACTACCGAGATGGGGCCGAAAGCTAGTGCCCTTTTCCCTCAGTTTTTGG
AACTGGAAGAggtgataaaatgaaaaatatcgaaaacgATCCCCTTATGA
AGGGTTTAGAGAAGACCCTTCTTGGAAAAGAACTGTTCCATGTGTCAGAC
TTGAGGTCTGACAAGAACTATGCCTTAATGATGTTCTTCACTGGTAAGGT
AGGTTGTTTTACTTTCA Coding sequence (CDS) from alignment at sc0002437:13911..20077+ >TCONS_00040456 ID=TCONS_00040456|Name=TCONS_00040456|organism=Clytia hemisphaerica|type=CDS|length=2268bp|location=Sequence derived from alignment at sc0002437:13911..20077+ (Clytia hemisphaerica)
AATTTTCCTGCAGCAATCCAAATCTTTGGGGCCACTTTCATGGCCCTTCA
TTTTAAAACTATCATGGACGAGTATGGGTTCGTTCCTGTGCCATTAGTCA
TCGGAGCTTCTGGTACAACAAAGTCCACCATGGCCAAATTGGCTCTTGCA
TCTATTGGTGTTAAAGGAAATAAATTTGATCCGACTTATTCATCACTTGT
GAACCTTGTTTCGAAAACCCAAGTACCTTTTATTTGGGAGGATGCTGAAG
ATTTCAATTGCCTTGGTAAATTGGTGATGCTGATATATAATGATtCTGAA
CGAGAAAAGTATGAAGGGTCATCTGAAAGTCCACATACGATGCCGGTATG
CACTACCAACGGCACTTTCTTTGACAGTCTCCCTGAAGGAATACGCTACA
ACAGATTCGTCCAACGTACACTTTTGATACCGTTCAATGAATATGAACAC
CAAAAATTGGGTGTTATTGGAAAGTTGATGTTTTCGCATACGCTGACTAC
CGAGATGGGGCCGAAAGCTAGTGCCCTTTTCCCTCAGTTTTTGGAACTGG
AAGAggtgataaaatgaAATTTTCCTGCAGCAATCCAAATCTTTGGGGCC
ACTTTCATGGCCCTTCATTTTAAAACTATCATGGACGAGTATGGGTTCGT
TCCTGTGCCATTAGTCATCGGAGCTTCTGGTACAACAAAGTCCACCATGG
CCAAATTGGCTCTTGCATCTATTGGTGTTAAAGGAAATAAATTTGATCCG
ACTTATTCATCACTTGTGAACCTTGTTTCGAAAACCCAAGTACCTTTTAT
TTGGGAGGATGCTGAAGATTTCAATTGCCTTGGTAAATTGGTGATGCTGA
TATATAATGATtCTGAACGAGAAAAGTATGAAGGGTCATCTGAAAGTCCA
CATACGATGCCGGTATGCACTACCAACGGCACTTTCTTTGACAGTCTCCC
TGAAGGAATACGCTACAACAGATTCGTCCAACGTACACTTTTGATACCGT
TCAATGAATATGAACACCAAAAATTGGGTGTTATTGGAAAGTTGATGTTT
TCGCATACGCTGACTACCGAGATGGGGCCGAAAGCTAGTGCCCTTTTCCC
TCAGTTTTTGGAACTGGAAGAggtgataaaatgaAATTTTCCTGCAGCAA
TCCAAATCTTTGGGGCCACTTTCATGGCCCTTCATTTTAAAACTATCATG
GACGAGTATGGGTTCGTTCCTGTGCCATTAGTCATCGGAGCTTCTGGTAC
AACAAAGTCCACCATGGCCAAATTGGCTCTTGCATCTATTGGTGTTAAAG
GAAATAAATTTGATCCGACTTATTCATCACTTGTGAACCTTGTTTCGAAA
ACCCAAGTACCTTTTATTTGGGAGGATGCTGAAGATTTCAATTGCCTTGG
TAAATTGGTGATGCTGATATATAATGATtCTGAACGAGAAAAGTATGAAG
GGTCATCTGAAAGTCCACATACGATGCCGGTATGCACTACCAACGGCACT
TTCTTTGACAGTCTCCCTGAAGGAATACGCTACAACAGATTCGTCCAACG
TACACTTTTGATACCGTTCAATGAATATGAACACCAAAAATTGGGTGTTA
TTGGAAAGTTGATGTTTTCGCATACGCTGACTACCGAGATGGGGCCGAAA
GCTAGTGCCCTTTTCCCTCAGTTTTTGGAACTGGAAGAggtgataaaatg
aAATTTTCCTGCAGCAATCCAAATCTTTGGGGCCACTTTCATGGCCCTTC
ATTTTAAAACTATCATGGACGAGTATGGGTTCGTTCCTGTGCCATTAGTC
ATCGGAGCTTCTGGTACAACAAAGTCCACCATGGCCAAATTGGCTCTTGC
ATCTATTGGTGTTAAAGGAAATAAATTTGATCCGACTTATTCATCACTTG
TGAACCTTGTTTCGAAAACCCAAGTACCTTTTATTTGGGAGGATGCTGAA
GATTTCAATTGCCTTGGTAAATTGGTGATGCTGATATATAATGATtCTGA
ACGAGAAAAGTATGAAGGGTCATCTGAAAGTCCACATACGATGCCGGTAT
GCACTACCAACGGCACTTTCTTTGACAGTCTCCCTGAAGGAATACGCTAC
AACAGATTCGTCCAACGTACACTTTTGATACCGTTCAATGAATATGAACA
CCAAAAATTGGGTGTTATTGGAAAGTTGATGTTTTCGCATACGCTGACTA
CCGAGATGGGGCCGAAAGCTAGTGCCCTTTTCCCTCAGTTTTTGGAACTG
GAAGAggtgataaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040456-exon-sc0002437-1491911889:13911..14088 | TCONS_00040456-exon-sc0002437-1491911889:13911..14088 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1510915933:13911..14088 | TCONS_00040456-exon-sc0002437-1510915933:13911..14088 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1575043694:13911..14088 | TCONS_00040456-exon-sc0002437-1575043694:13911..14088 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1491911889:14323..14438 | TCONS_00040456-exon-sc0002437-1491911889:14323..14438 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1510915933:14323..14438 | TCONS_00040456-exon-sc0002437-1510915933:14323..14438 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1575043694:14323..14438 | TCONS_00040456-exon-sc0002437-1575043694:14323..14438 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1491911889:19416..19525 | TCONS_00040456-exon-sc0002437-1491911889:19416..19525 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1510915933:19416..19525 | TCONS_00040456-exon-sc0002437-1510915933:19416..19525 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1575043694:19416..19525 | TCONS_00040456-exon-sc0002437-1575043694:19416..19525 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1491911889:19771..20077 | TCONS_00040456-exon-sc0002437-1491911889:19771..20077 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1510915933:19771..20077 | TCONS_00040456-exon-sc0002437-1510915933:19771..20077 | Clytia hemisphaerica | exon |
| TCONS_00040456-exon-sc0002437-1575043694:19771..20077 | TCONS_00040456-exon-sc0002437-1575043694:19771..20077 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002437 | supercontig | sc0002437:13911..20077 + |
Blast
The following BLAST results are available for this feature:
|
