TCONS_00040440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040440
Unique NameTCONS_00040440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040440 ID=TCONS_00040440|Name=TCONS_00040440|organism=Clytia hemisphaerica|type=transcript|length=852bp
GCTCGGCTGTTGCTCCACTGCTAGTGGTCAGTTCGATCTTTGCTCTACCC
TTCACTCGCAGTAGGTCTTTAGTACCATATGGCGGAGCTTCACTTTCGAT
TTATACAGTCTGGTCGTGTTGGCAAATTTGCGAAAGTCTTTTTCTGGGAT
CAGAGTCTTTCTGCATCCGGAGTCGACTCTCATTTTCAAACACGTACCAT
TGGCTTCCACATCgatcatttcaatttcattttggtcaTTCACCAGAGGG
ATGAAGTTCACGGTCAAGACGCGACCCATCAGTTGTTCATCGTCTGAATC
ACTCGATTCGTCCAGGGCATTAACATCTGTTTCTGGTGCACCAGGACATA
CTGGCGATTTCGCAAAATGGTGCTTCTTCTTGCAGTCATTGCAACGTTTC
CCTTTTGTGAGACACTTTCCTTTTGAGTGGGCTTTCCGACGTTCATATCC
GCAAAAGTCACAAATTTTTGGGGAACTTTCGGTTTGCTTTCCCCTACCGA
TCGAATCTCTCGTGATGTTCGGTTTCGATGGGTCTGGTCTTCTTGGTCCT
CTTCTACTGCCGATCCAGTTAACACTCTCCTGTTTCTCAATGTTTTGCGC
TTGTATCGATGATGATTCTAGCGCTATTCCGTATTTAACGAAATCATCGA
AATTTGCACCCTCCGCGAGGGCATTTCCTGAGCTTATTGTTATTCGTCTG
CATCGTCATAGCGTCGCGAGCGGCTTTCTTTGCAGTGTAGGTGGCGAAAT
TGCAGAGCTTGCTTGATCCAAAACTTTTGTGTACCATTCGGTGAACGGCA
TCTGCCCTTGTGGCATCTCGTTAAATAGTTTAAATACCGGGTAAGCTTCG
TT
Run BLAST on NCBI

transcript from alignment at sc0002429:11605..12456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040440 ID=TCONS_00040440|Name=TCONS_00040440|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0002429:11605..12456 (Clytia hemisphaerica)
AACGAAGCTTACCCGGTATTTAAACTATTTAACGAGATGCCACAAGGGCA
GATGCCGTTCACCGAATGGTACACAAAAGTTTTGGATCAAGCAAGCTCTG
CAATTTCGCCACCTACACTGCAAAGAAAGCCGCTCGCGACGCTATGACGA
TGCAGACGAATAACAATAAGCTCAGGAAATGCCCTCGCGGAGGGTGCAAA
TTTCGATGATTTCGTTAAATACGGAATAGCGCTAGAATCATCATCGATAC
AAGCGCAAAACATTGAGAAACAGGAGAGTGTTAACTGGATCGGCAGTAGA
AGAGGACCAAGAAGACCAGACCCATCGAAACCGAACATCACGAGAGATTC
GATCGGTAGGGGAAAGCAAACCGAAAGTTCCCCAAAAATTTGTGACTTTT
GCGGATATGAACGTCGGAAAGCCCACTCAAAAGGAAAGTGTCTCACAAAA
GGGAAACGTTGCAATGACTGCAAGAAGAAGCACCATTTTGCGAAATCGCC
AGTATGTCCTGGTGCACCAGAAACAGATGTTAATGCCCTGGACGAATCGA
GTGATTCAGACGATGAACAACTGATGGGTCGCGTCTTGACCGTGAACTTC
ATCCCTCTGGTGAAtgaccaaaatgaaattgaaatgatcGATGTGGAAGC
CAATGGTACGTGTTTGAAAATGAGAGTCGACTCCGGATGCAGAAAGACTC
TGATCCCAGAAAAAGACTTTCGCAAATTTGCCAACACGACCAGACTGTAT
AAATCGAAAGTGAAGCTCCGCCATATGGTACTAAAGACCTACTGCGAGTG
AAGGGTAGAGCAAAGATCGAACTGACCACTAGCAGTGGAGCAACAGCCGA
GC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024585XLOC_024585Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040440-exon-sc0002429-1491911889:11605..12456TCONS_00040440-exon-sc0002429-1491911889:11605..12456Clytia hemisphaericaexon
TCONS_00040440-exon-sc0002429-1510915933:11605..12456TCONS_00040440-exon-sc0002429-1510915933:11605..12456Clytia hemisphaericaexon
TCONS_00040440-exon-sc0002429-1575043694:11605..12456TCONS_00040440-exon-sc0002429-1575043694:11605..12456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002429supercontigsc0002429:11605..12456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.969986	0.812432	0.85708	1.42562	0.738533	0.780782	0.627671	1.17284	1.05309	1.80826	1.03509	1.23655	0.730584	0.973441	0.767725	0.826323	1.00729	0.878729	1.38466	0.903472	1.439	1.57545	0.572724	0.690183	0.954159	0.727634	0.713271	0.565197	0.447794	0.522213
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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