|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040439 ID=TCONS_00040439|Name=TCONS_00040439|organism=Clytia hemisphaerica|type=transcript|length=802bp
CAACGATGGGCCAGTTTGAATATCGATCAACACATACGAGGTAATAATGT
CCTTTGTGGTGAAAGAAGTCACCACACAGATATTGGAAAGGATACTCTGG
GTATGTGAGAGGCGTTGGTGGAGCAGATGGTTGCGATGGGGCGATGCGGT
CACAATGGTTGCAGTTGTTACGTTGTTTGACAATGTCTTTTGAAATACCA
GGCCAAAAAACAGACGAATCAGCTCTGGCGGTCATGGATGTGACACCGTG
GTGTGCCGCATGCAGGGCAATCAGGACGGCTTGTCGAAGCTGCTTGGGAA
TGATGACTCTGTCCTTGTAGAGAGCGACACCATCAACGGTTGAGAGATGA
TCTATGAATTGATGGAATGGTTGAACTGAAGCTGGAATTTCGTTTTTGCT
AGCTGACATGTTAGAGTCGATGAAGTCAATAAGCTGTTTCATCTCAGGGT
CACTGGCTGATAGTAGACGTACTTTGTCCCAAGTGATCGATTGGATTGAT
TGGAGAGTATAGTTGGATACATTGATGGGTGCAATGTCATCTTGGAGAAA
CAATGGTTCTGGCGAAGGATCACCCGTTGGATATCTTGACGTTGCATCAG
ATGCACGGTGTTTCAGTCCAGGGATGTGATACATGGAAAATCGATAGCGT
AGGGTGAGTTCTTTCAGGTTCTCAAGCCGGTTGTTGGGTATGTCATCCAA
AGAGCGATTGGTGAATAGACCCAAAAGTGGTTTGTGGTCGACAGCAATGA
TCAGTTCTTTACAACCAAGGACGAAATGTCTTGCCCTATCAAGGGAATAC
GC Run BLAST on NCBI protein sequence of TCONS_00040439-protein >TCONS_00040439-protein ID=TCONS_00040439-protein|Name=TCONS_00040439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
AYSLDRARHFVLGCKELIIAVDHKPLLGLFTNRSLDDIPNNRLENLKELT
LRYRFSMYHIPGLKHRASDATSRYPTGDPSPEPLFLQDDIAPINVSNYTL
QSIQSITWDKVRLLSASDPEMKQLIDFIDSNMSASKNEIPASVQPFHQFI
DHLSTVDGVALYKDRVIIPKQLRQAVLIALHAAHHGVTSMTARADSSVFW
PGISKDIVKQRNNCNHCDRIAPSQPSAPPTPLTYPEYPFQYLCGDFFHHK
GHYYLVCVDRYSNWPIV Run BLAST on NCBI transcript from alignment at sc0002429:4450..5251 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040439 ID=TCONS_00040439|Name=TCONS_00040439|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0002429:4450..5251 (Clytia hemisphaerica)
GCGTATTCCCTTGATAGGGCAAGACATTTCGTCCTTGGTTGTAAAGAACT
GATCATTGCTGTCGACCACAAACCACTTTTGGGTCTATTCACCAATCGCT
CTTTGGATGACATACCCAACAACCGGCTTGAGAACCTGAAAGAACTCACC
CTACGCTATCGATTTTCCATGTATCACATCCCTGGACTGAAACACCGTGC
ATCTGATGCAACGTCAAGATATCCAACGGGTGATCCTTCGCCAGAACCAT
TGTTTCTCCAAGATGACATTGCACCCATCAATGTATCCAACTATACTCTC
CAATCAATCCAATCGATCACTTGGGACAAAGTACGTCTACTATCAGCCAG
TGACCCTGAGATGAAACAGCTTATTGACTTCATCGACTCTAACATGTCAG
CTAGCAAAAACGAAATTCCAGCTTCAGTTCAACCATTCCATCAATTCATA
GATCATCTCTCAACCGTTGATGGTGTCGCTCTCTACAAGGACAGAGTCAT
CATTCCCAAGCAGCTTCGACAAGCCGTCCTGATTGCCCTGCATGCGGCAC
ACCACGGTGTCACATCCATGACCGCCAGAGCTGATTCGTCTGTTTTTTGG
CCTGGTATTTCAAAAGACATTGTCAAACAACGTAACAACTGCAACCATTG
TGACCGCATCGCCCCATCGCAACCATCTGCTCCACCAACGCCTCTCACAT
ACCCAGAGTATCCTTTCCAATATCTGTGTGGTGACTTCTTTCACCACAAA
GGACATTATTACCTCGTATGTGTTGATCGATATTCAAACTGGCCCATCGT
TG Coding sequence (CDS) from alignment at sc0002429:4450..5251 >TCONS_00040439 ID=TCONS_00040439|Name=TCONS_00040439|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at sc0002429:4450..5251 (Clytia hemisphaerica)
GCGTATTCCCTTGATAGGGCAAGACATTTCGTCCTTGGTTGTAAAGAACT
GATCATTGCTGTCGACCACAAACCACTTTTGGGTCTATTCACCAATCGCT
CTTTGGATGACATACCCAACAACCGGCTTGAGAACCTGAAAGAACTCACC
CTACGCTATCGATTTTCCATGTATCACATCCCTGGACTGAAACACCGTGC
ATCTGATGCAACGTCAAGATATCCAACGGGTGATCCTTCGCCAGAACCAT
TGTTTCTCCAAGATGACATTGCACCCATCAATGTATCCAACTATACTCTC
CAATCAATCCAATCGATCACTTGGGACAAAGTACGTCTACTATCAGCCAG
TGACCCTGAGATGAAACAGCTTATTGACTTCATCGACTCTAACATGTCAG
CTAGCAAAAACGAAATTCCAGCTTCAGTTCAACCATTCCATCAATTCATA
GATCATCTCTCAACCGTTGATGGTGTCGCTCTCTACAAGGACAGAGTCAT
CATTCCCAAGCAGCTTCGACAAGCCGTCCTGATTGCCCTGCATGCGGCAC
ACCACGGTGTCACATCCATGACCGCCAGAGCTGATTCGTCTGTTTTTTGG
CCTGGTATTTCAAAAGACATTGTCAAACAACGTAACAACTGCAACCATTG
TGACCGCATCGCCCCATCGCAACCATCTGCTCCACCAACGCCTCTCACAT
ACCCAGAGTATCCTTTCCAATATCTGTGTGGTGACTTCTTTCACCACAAA
GGACATTATTACCTCGTATGTGTTGATCGATATTCAAACTGGCCCATCGT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040439-exon-sc0002429-1491911889:4450..5251 | TCONS_00040439-exon-sc0002429-1491911889:4450..5251 | Clytia hemisphaerica | exon |
| TCONS_00040439-exon-sc0002429-1510915933:4450..5251 | TCONS_00040439-exon-sc0002429-1510915933:4450..5251 | Clytia hemisphaerica | exon |
| TCONS_00040439-exon-sc0002429-1575043694:4450..5251 | TCONS_00040439-exon-sc0002429-1575043694:4450..5251 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002429 | supercontig | sc0002429:4450..5251 . |
Blast
The following BLAST results are available for this feature:
|
