TCONS_00040437 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040437
Unique NameTCONS_00040437
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040437 ID=TCONS_00040437|Name=TCONS_00040437|organism=Clytia hemisphaerica|type=transcript|length=2398bp
gtaagtattaagtagtaggtagtaggcgttttgtacttgccggtTGATTA
TGGATTAATTATGAGTTATCAATTGGAAAAAGCTAtcataaactattgca
agaactctcgaaacaaaacatgaCCATagtataatgtcaagatgtcaatt
aatgtgttcaaaaaagttgtaaaaaaattACCTCTATAATTCTGAATCca
ttgctcgtgtttaaaaaaatgttaacaattttgaaagaccccatcggact
TAGGCAAGGCTGttagatttaggaccactcacggtatggTTTTGTATTGa
gtggggggggggtcttgtatacaaaaaaaaatgcaaCAAGTTGCATCACT
ACTGCTGGCCGGCTTTGGAGAGCAGGAAACTTGGTTAGAACAAGGACAGT
ATGATcaattcaaataatttttatttctacaGCATACATTATTTGATGAT
GACCTATTAAAGACCTTTACACGCTATCATGCATACAAATACAGAGATGT
ACCAACAAGACAAATACGTGAACATCAGATGTGCCACTCAACTAGTCAAC
CTATGTATATAGATCCCTTCAAAGCACCTTTTCTACCTCCTGAAACACAT
CTCCTTAGTTGGAGTAGTATTTTGGGTAATGCAAATACCATTGCTTCAGG
ACATTGGTTTATTGAGACAGAAGTAGGAAAACTTTCATGGGATTGTGTTC
AAAAATTCCTTCAGTTGCACAAAATAAAGGAACTAAAGAAAGAGGTGTCA
AGTGAAATTGATTGGTTTAATGACAGTTGCCAAACTCCAAATTCGATTGG
GCATCCACCCTCTCAAGCTGTTATAAACAGCTTTCGATCATTCCTTTTAA
ATGAACCTGCAAAACAAGTGTGTAGTAACTACTTGATGTCAGCAATGGAA
ATGAGTGCTCTGTGTGTCAAAAGGTTGGTTTATGGCAGCCAGATACTCTG
GTTTTCTCATCAGCTAAACAAACAGCAAAAGGAAACTTTGTGTGTTTATC
TAAATATGACAAAGGAGATAAGATGTTCCAATATTTCTGAATATAAAAGA
CTTTGTTTTTTCATCAACGTTGGGCGGTATGTCAACAAGGAAACTTTTAT
TGCTAATGCGGCTCAAGGGAAACAAGGGTctcattgggtttgtttttttg
ttgataTGGAAAGCAAATGTGGTCTTTATGGAGATTCCCTTGGTTGGCCC
ATGCCTGGTGACCTGAAAGAACAAATTGAACAAATGTGTAGAAAGAAGAT
ACCTGGATTTAGCATTAACACTATCAAGTATGCCCACCAACCAGAAAACC
ATTCTTCAGCAAAAACTAGATGCGGTGAAAACTGCATCCGTTATCCACTA
CAAACATGTGGAAATATATGTGGAATTATATCCATTGTTATTGCAGCAAT
ATACTGCCTTAGTCATGATTATTTCCGGCAGATTACAGAAAGAACATCAA
TCAAACCAAAGCCGAAATTTTCTGATGAAACCAACTTTCTTCAACAATTA
TTTGAGACGAGTTGTTATTGCATGGATCACAACAAAGCATATTGATATTC
ACAATGTATGTCCAGATGCAACTACGGATGTCATCTCTCCAGATTCAGAT
TCTGATTCAGATTCAGAAATCCCACGGcttaaagaagaaatttttgttaa
aCTAGAGCCTTCTAAAGCAGCTGAAACTGAAAAAGGAGGAGAAAAGATTG
CTCCAAAAGCTAAGACTAAAAAAGAAGTGAAAAATACCATACCTGTTCCT
TCGAAATCTGAGACTgagaaaaaaggagaaaatatcACACCTGCTCCTAC
AGAAGAAGCTGAGGCTGAAAAGAGAAACAAAAAAAGGATTTCTTGCCCTC
ACTGCACTGAAACATTTACTCGAAATTCTAGTCTTAAAAGGCATATTGGT
AGAATACACGAAACTGAAGACTCTGCTAAAGTACAAACAGGAAAAACAAT
TTGTCTCGAGTGTGGTACAAAATTTCAGAGAGTCTTGGAACTATCTAAAC
ATCTAGAGGAGAAACATTCCAAAATTCTTCGTAATGAAACATTGCATTTT
GGAAGTCATCAAGTGTTCAAGTTGATATATTGCTGAGCAATAATAGACAG
ATTGGAAGAGCGATCTTGAGGAACAAAGTAAATGTAGCTATACATCATAT
GGTGGATGGACGGGGAAGGATGGAGTCAAGCATACTGCCTTCAGGTGCTC
AAGAAGTggtttttacaaaaagaaaagatctGGGAGAAGGAGAAGAACTA
AAACAAGTGGAACCTgcaaaatagacaacaactgtACATCAGTAATCAAA
ATTACTGAAGACCCTCAATCCGATGCATTGACTGTTGATGTTTGCTACAC
CCACTACTCGCACAGTGTTCAGTTAGAGCATGTATGGTTATCTAAAAG
Run BLAST on NCBI

transcript from alignment at sc0002427:3476..6648+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040437 ID=TCONS_00040437|Name=TCONS_00040437|organism=Clytia hemisphaerica|type=transcript|length=3173bp|location=Sequence derived from alignment at sc0002427:3476..6648+ (Clytia hemisphaerica)
gtaagtattaagtagtaggtagtaggcgttttgtacttgccggtTGATTA
TGGATTAATTATGAGTTATCAATTGGAAAAAGCTAtcataaactattgca
agaactctcgaaacaaaacatgaCCATagtataatgtcaagatgtcaatt
aatgtgttcaaaaaagttgtaaaaaaattACCTCTATAATTCTGAATCca
ttgctcgtgtttaaaaaaatgttaacaattttgaaagaccccatcggact
TAGGCAAGGCTGttagatttaggaccactcacggtatggTTTTGTATTGa
gtggggggggggtcttgtatacaaaaaaaaatgcaaCAAGTTGCATCACT
ACTGCTGGCCGGCTTTGGAGAGCAGGAAACTTGGTTAGAACAAGGACAGT
ATGATcaattcaaataatttttatttctacaGCATACATTATTTGATGAT
GACCTATTAAAGACCTTTACACGCTATCATGCATACAAATACAGAGATGT
ACCAACAAGACAAATACGTGAACATCAGATGTGCCACTCAACTAGTCAAC
CTATGTATATAGATCCCTTCAAAGCACCTTTTCTACCTCCTGAAACACAT
CTCCTTAGTTGGAGTAGTATTTTGGGTAATGCAAATACCATTGCTTCAGG
ACATTGGTTTATTGAGACAGAAGTAGGAAAACTTTCATGGGATTGTGTTC
AAAAATTCCTTCAGTTGCACAAAATAAAGGAACTAAAGAAAGAGGTGTCA
AGTGAAATTGATTGGTTTAATGACAGTTGCCAAACTCCAAATTCGATTGG
GCATCCACCCTCTCAAGCTGTTATAAACAGCTTTCGATCATTCCTTTTAA
ATGAACCTGCAAAACAAGTGTGTAGTAACTACTTGATGTCAGCAATGGAA
ATGAGTGCTCTGTGTGTCAAAAGGTTGGTTTATGGCAGCCAGATACTCTG
GTTTTCTCATCAGCTAAACAAACAGCAAAAGGAAACTTTGTGTGTTTATC
TAAATATGACAAAGGAGATAAGATGTTCCAATATTTCTGAATATAAAAGA
CTTTGTTTTTTCATCAACGTTGGGCGGTATGTCAACAAGGAAACTTTTAT
TGCTAATGCGGCTCAAGGGAAACAAGGGTctcattgggtttgtttttttg
ttgataTGGAAAGCAAATGTGGTCTTTATGGAGATTCCCTTGGTTGGCCC
ATGCCTGGTGACCTGAAAGAACAAATTGAACAAATGTGTAGAAAGAAGAT
ACCTGGATTTAGCATTAACACTATCAAGTATGCCCACCAACCAGAAAACC
ATTCTTCAGCAAAAACTAGATGCGGTGAAAACTGCATCCGTTATCCACTA
CAAACATGTGGAAATATATGTGGAATTATATCCATTGTTATTGCAGCAAT
ATACTGCCTTAGTCATGATTATTTCCGGCAGATTACAGAAAGAACATCAA
TCAAACCAAAGCCGAAATTTTCTGATGAAACCAACTTTCTTCAACAATTA
TTTGAGACGAGTTGTTATTGCATGGATCACAACAAAGCATATTGATATTC
ACAATGTATGTCCAGATGCAACTACGGATGTCATCTCTCCAGATTCAGAT
TCTGATTCAGATTCAGAAATCCCACGGcttaaagaagaaatttttgttaa
aCTAGAGCCTTCTAAAGCAGCTGAAACTGAAAAAGGAGGAGAAAAGATTG
CTCCAAAAGCTAAGACTAAAAAAGAAGTGAAAAATACCATACCTGTTCCT
TCGAAATCTGAGACTgagaaaaaaggagaaaatatcACACCTGCTCCTAC
AGAAGAAGCTGAGGCTGAAAAGAGAAACAAAAAAAGGATTTCTTGCCCTC
ACTGCACTGAAACATTTACTCGAAATTCTAGTCTTAAAAGGCATATTGGT
AGAATACACGAAACTGAAGACTCTGCTAAAGTACAAACAGGAAAAACAAT
TTGTCTCGAGTGTGGTACAAAATTTCAGAGAGTCTTGGAACTATCTAAAC
ATCTAGAGGAGAAACATTCCAAAATTCTTCGTAATGAAACATTGCATTTT
GGAAGTCATCAAGGTATTGTGTTTTATTTTGACTTAATTCAGATTTTTAC
TTGGACAACATTGATTACTTTTAATGAGAAAAGAGAAATTTCTTTCTGCT
AGATCTTTTCCCATACCTGATACTTTACGTTATAAGATATCAATGACTTC
TTCAACTGGACATGACATACAAATGTAACATTCTTGACTTACACTTACAT
AGATTTACAAAACCTTCTTACAAGACACATGGACAAAAGacgattataat
ttttttctcacataCAGTGTTCAAGTTGATATATTGCTGAGCAATAATAG
ACAGGTAGATGACAATTTGCTTTACTTTGACAAGTTTGATATATTAGTCA
CATAATACGTGTACGAACATCATCCTGACATATATGACTTACAAATACTA
ATGATCATTATTGACTGTTTACAAAGTCTATCTTTCGCAATTTATCCAAG
GTGTTGAATTTTAAGTGGATAGCCTTAGTGCATAACATATTTGGAACTGA
ACATTGAAATAAAGATTTCATAAGTACTAAATGATATCTATACTTTAGAT
TCTTTAAAAGCTGACATCATATATTCAATGAGGTGCCTTCTTATGATGTT
AATGTCAGCCTTGATTAGACTACACAACATAAAAAGTGAATTTCCATGGA
AAgacaaaatccaaatttattttcacttttttacagaatttttaGATTGG
AAGAGCGATCTTGAGGAACAAAGTAAATGTAGCTATACATCATATGGTGG
ATGGACGGGGAAGGATGGAGTCAAGCATACTGCCTTCAGGTGCTCAAGAA
GTggtttttacaaaaagaaaagatctGGGAGAAGGAGAAGAACTAAAACA
AGTGGTAAATTTCTAATTGATGATAATAAGATGATTATCCAGAAGTATTT
TCTCAACAAATCTTTGCTAGAGAGCTTTCAAATGATTTCTTTGTGTTGTA
TTTCATTAATACttactttctttatttttgttagGAACCTgcaaaataga
caacaactgtACATCAGTAATCAAAATTACTGAAGACCCTCAATCCGATG
CATTGACTGTTGATGTTTGCTACACCCACTACTCGCACAGTGTTCAGTTA
GAGCATGTATGGTTATCTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024582XLOC_024582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040437-exon-sc0002427-1491911889:3476..5538TCONS_00040437-exon-sc0002427-1491911889:3476..5538Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1510915933:3476..5538TCONS_00040437-exon-sc0002427-1510915933:3476..5538Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1575043694:3476..5538TCONS_00040437-exon-sc0002427-1575043694:3476..5538Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1491911889:5793..5829TCONS_00040437-exon-sc0002427-1491911889:5793..5829Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1510915933:5793..5829TCONS_00040437-exon-sc0002427-1510915933:5793..5829Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1575043694:5793..5829TCONS_00040437-exon-sc0002427-1575043694:5793..5829Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1491911889:6221..6379TCONS_00040437-exon-sc0002427-1491911889:6221..6379Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1510915933:6221..6379TCONS_00040437-exon-sc0002427-1510915933:6221..6379Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1575043694:6221..6379TCONS_00040437-exon-sc0002427-1575043694:6221..6379Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1491911889:6510..6648TCONS_00040437-exon-sc0002427-1491911889:6510..6648Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1510915933:6510..6648TCONS_00040437-exon-sc0002427-1510915933:6510..6648Clytia hemisphaericaexon
TCONS_00040437-exon-sc0002427-1575043694:6510..6648TCONS_00040437-exon-sc0002427-1575043694:6510..6648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002427supercontigsc0002427:3476..6648 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00374326	0.0270857	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040437 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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