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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040429 ID=TCONS_00040429|Name=TCONS_00040429|organism=Clytia hemisphaerica|type=transcript|length=1176bp
TACCTCGCTCCGTAATTTGATATCGTCTCTCTAATTCATCTAAAGTCTTC
CTTTTCAATGTTTTCCCGTTCTTAATCTCATTAACCCTTCCCAGATCTTT
CCTCCATTGTTGAATACTCCCTTCCAATCTACGTTGCCACCATGGTTTCT
TTGACTTCAACTTTTCACCTTTCTCCTTCAATAACCCAAGACGTTCACAG
ACAATGTACGAACCCGCATACAACAGTCGATTTGCCTTTGTTATGTCCGG
AATTCCAATAGCAACAAAGTTCCGCAGAAGTGAATTAACGATGGAAACCT
CCTTCATGACCAAACATTTATCAATATTCTTCAGACTTGGTATCTCTCTA
CACTCATTGCTGTTAAGAATCTGATGGAtacgaaaaataattttgttttc
ttcttcatttgtaATACGAACCACATCTCCcttctcaaaaacattcaaCC
TCTCAACCTGAACTTCCGGTTCAAAATCATCTTCGTGGTCCCAAAAATCA
TCTCCGATGTCAGATTCTTTACCTACAAAAGACTCAACCGAATGACACTG
GCTTGATTTGGAAAAAACTGTAAAATCGATATCAACATCGTCTACTGCTA
AGTCATCGTCTTGAGTTGTTTCATTATATACATTATTTACACTATTGTCC
TGGCCCGCAGGTTCACCCTCACTCCTCACAAGTCGCTCAATCTCACCCTT
CTCATACTCACTCAATAACCCACCCTTTTCGATACTCTTGATTTGAGCCA
AGACACTCGCCTGCGAGCGCTTGCTCAAAGCTCTTTCCTCCCAAAATTCC
ATTAACCTTTTGATATACCCATAGCTCCCCTTCCCTCCACTCCTTACAAA
ACACTCCCACACCAGGCATCTCTCTTCTTTGGTCCACTTAGTCTTATTTT
TCCCAGTCCTATCCCCCCTTTTGCTTAACTCTTTCCCCTGGACCAGCCCC
CTTCCCCCCGAATTCGGAACACCTTCCCCTACTTCACTTGTAGTTCTGAA
AAGAACTGTTTTAGGTGCTCCAGGTTGGTCCGACTGAGGGTCTTTCCTCA
CTGGAGACTTTTCATGATTTCTGCACTTGTGCATTATTTTTCACTAAATC
TCAGAAATGATAAACAATTCTGGCGTCTATGATCAGTTACCTCACCGAAG
TAAGGCGTAGCAGGAGCACGAACGAG Run BLAST on NCBI protein sequence of TCONS_00040429-protein >TCONS_00040429-protein ID=TCONS_00040429-protein|Name=TCONS_00040429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MHKCRNHEKSPVRKDPQSDQPGAPKTVLFRTTSEVGEGVPNSGGRGLVQG
KELSKRGDRTGKNKTKWTKEERCLVWECFVRSGGKGSYGYIKRLMEFWEE
RALSKRSQASVLAQIKSIEKGGLLSEYEKGEIERLVRSEGEPAGQDNSVN
NVYNETTQDDDLAVDDVDIDFTVFSKSSQCHSVESFVGKESDIGDDFWDH
EDDFEPEVQVERLNVFEKGDVVRITNEEENKIIFRIHQILNSNECREIPS
LKNIDKCLVMKEVSIVNSLLRNFVAIGIPDITKANRLLYAGSYIVCERLG
LLKEKGEKLKSKKPWWQRRLEGSIQQWRKDLGRVNEIKNGKTLKRKTLDE
LERRYQITERG Run BLAST on NCBI transcript from alignment at sc0002425:12330..13505 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040429 ID=TCONS_00040429|Name=TCONS_00040429|organism=Clytia hemisphaerica|type=transcript|length=1176bp|location=Sequence derived from alignment at sc0002425:12330..13505 (Clytia hemisphaerica)
CTCGTTCGTGCTCCTGCTACGCCTTACTTCGGTGAGGTAACTGATCATAG
ACGCCAGAATTGTTTATCATTTCTGAGATTTAGTGAAAAATAATGCACAA
GTGCAGAAATCATGAAAAGTCTCCAGTGAGGAAAGACCCTCAGTCGGACC
AACCTGGAGCACCTAAAACAGTTCTTTTCAGAACTACAAGTGAAGTAGGG
GAAGGTGTTCCGAATTCGGGGGGAAGGGGGCTGGTCCAGGGGAAAGAGTT
AAGCAAAAGGGGGGATAGGACTGGGAAAAATAAGACTAAGTGGACCAAAG
AAGAGAGATGCCTGGTGTGGGAGTGTTTTGTAAGGAGTGGAGGGAAGGGG
AGCTATGGGTATATCAAAAGGTTAATGGAATTTTGGGAGGAAAGAGCTTT
GAGCAAGCGCTCGCAGGCGAGTGTCTTGGCTCAAATCAAGAGTATCGAAA
AGGGTGGGTTATTGAGTGAGTATGAGAAGGGTGAGATTGAGCGACTTGTG
AGGAGTGAGGGTGAACCTGCGGGCCAGGACAATAGTGTAAATAATGTATA
TAATGAAACAACTCAAGACGATGACTTAGCAGTAGACGATGTTGATATCG
ATTTTACAGTTTTTTCCAAATCAAGCCAGTGTCATTCGGTTGAGTCTTTT
GTAGGTAAAGAATCTGACATCGGAGATGATTTTTGGGACCACGAAGATGA
TTTTGAACCGGAAGTTCAGGTTGAGAGGttgaatgtttttgagaagGGAG
ATGTGGTTCGTATtacaaatgaagaagaaaacaaaattatttttcgtaTC
CATCAGATTCTTAACAGCAATGAGTGTAGAGAGATACCAAGTCTGAAGAA
TATTGATAAATGTTTGGTCATGAAGGAGGTTTCCATCGTTAATTCACTTC
TGCGGAACTTTGTTGCTATTGGAATTCCGGACATAACAAAGGCAAATCGA
CTGTTGTATGCGGGTTCGTACATTGTCTGTGAACGTCTTGGGTTATTGAA
GGAGAAAGGTGAAAAGTTGAAGTCAAAGAAACCATGGTGGCAACGTAGAT
TGGAAGGGAGTATTCAACAATGGAGGAAAGATCTGGGAAGGGTTAATGAG
ATTAAGAACGGGAAAACATTGAAAAGGAAGACTTTAGATGAATTAGAGAG
ACGATATCAAATTACGGAGCGAGGTA Coding sequence (CDS) from alignment at sc0002425:12330..13505 >TCONS_00040429 ID=TCONS_00040429|Name=TCONS_00040429|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0002425:12330..13505 (Clytia hemisphaerica)
ATGCACAAGTGCAGAAATCATGAAAAGTCTCCAGTGAGGAAAGACCCTCA
GTCGGACCAACCTGGAGCACCTAAAACAGTTCTTTTCAGAACTACAAGTG
AAGTAGGGGAAGGTGTTCCGAATTCGGGGGGAAGGGGGCTGGTCCAGGGG
AAAGAGTTAAGCAAAAGGGGGGATAGGACTGGGAAAAATAAGACTAAGTG
GACCAAAGAAGAGAGATGCCTGGTGTGGGAGTGTTTTGTAAGGAGTGGAG
GGAAGGGGAGCTATGGGTATATCAAAAGGTTAATGGAATTTTGGGAGGAA
AGAGCTTTGAGCAAGCGCTCGCAGGCGAGTGTCTTGGCTCAAATCAAGAG
TATCGAAAAGGGTGGGTTATTGAGTGAGTATGAGAAGGGTGAGATTGAGC
GACTTGTGAGGAGTGAGGGTGAACCTGCGGGCCAGGACAATAGTGTAAAT
AATGTATATAATGAAACAACTCAAGACGATGACTTAGCAGTAGACGATGT
TGATATCGATTTTACAGTTTTTTCCAAATCAAGCCAGTGTCATTCGGTTG
AGTCTTTTGTAGGTAAAGAATCTGACATCGGAGATGATTTTTGGGACCAC
GAAGATGATTTTGAACCGGAAGTTCAGGTTGAGAGGttgaatgtttttga
gaagGGAGATGTGGTTCGTATtacaaatgaagaagaaaacaaaattattt
ttcgtaTCCATCAGATTCTTAACAGCAATGAGTGTAGAGAGATACCAAGT
CTGAAGAATATTGATAAATGTTTGGTCATGAAGGAGGTTTCCATCGTTAA
TTCACTTCTGCGGAACTTTGTTGCTATTGGAATTCCGGACATAACAAAGG
CAAATCGACTGTTGTATGCGGGTTCGTACATTGTCTGTGAACGTCTTGGG
TTATTGAAGGAGAAAGGTGAAAAGTTGAAGTCAAAGAAACCATGGTGGCA
ACGTAGATTGGAAGGGAGTATTCAACAATGGAGGAAAGATCTGGGAAGGG
TTAATGAGATTAAGAACGGGAAAACATTGAAAAGGAAGACTTTAGATGAA
TTAGAGAGACGATATCAAATTACGGAGCGAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040429-exon-sc0002425-1491911889:12330..13505 | TCONS_00040429-exon-sc0002425-1491911889:12330..13505 | Clytia hemisphaerica | exon |
| TCONS_00040429-exon-sc0002425-1510915933:12330..13505 | TCONS_00040429-exon-sc0002425-1510915933:12330..13505 | Clytia hemisphaerica | exon |
| TCONS_00040429-exon-sc0002425-1575043694:12330..13505 | TCONS_00040429-exon-sc0002425-1575043694:12330..13505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002425 | supercontig | sc0002425:12330..13505 . |
Blast
The following BLAST results are available for this feature:
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