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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040428 ID=TCONS_00040428|Name=TCONS_00040428|organism=Clytia hemisphaerica|type=transcript|length=1047bp
TTACCCAAGAGGAGTCAAGACACCATATCAAAAACTGTTTGCTTTTAGCG
AAGAACCTATTTTGGTACATAAGCATCTGCACTATATTAttcatattttt
aattttcagcatTCCCTTGGTCTGCTCAACAAAAGTGAACAAACCACTGA
AGGAATCATTGACATCATGGAAGAACAACACAAGATTGTACCGAAACTCC
GGAATGGAAATGTGAGGACGTTCACTGCTGGAGATCTCTTGACAGTTGAA
CGTGAACAAAATGCACAAATTGATAAAGAAGACAGCTTCACCTCATCTCA
ACGTTTAGAAGGATTGATTCCAGTTCTGGCTGATTTTCATACatatggaa
attttttagaGCTTATTTGGGCCATTCTATACGACCCAGCTTCAAGTGCT
GATGTGGGAACATTGTTTCAAGTTCGCAACTACTTGAATGCAAGAAACGT
GAAATCAGAGCCAATGAAAAGTGTTAACGCCTGTGAAGACCTAATGATGA
AGTATTCTGAAGCATTGATCGTTACAGCTTTTCAAACATACTGCAAAGAG
AAAGGCATCGACTTCTCAAGACATAGTACACGTGAAGCTGAATTCAAAAA
AGCCATCTCAGAAGTTGTCTCAGAGTTTGTCTTGCCCGACACAAACGACA
TGTCGAAGATCGTGACTCAATTTGACTGCACAGAATGTAAGAGTCAGTTC
AAAACgctgaaaaatctgaaaaagcaCCTGAAAGAAAAACACGAAAACAA
GAAGTACCATCCACCAGCATCACCAAACACAGACCGCAAGATGAACTACT
TACGAAATGCTCTCGCTCTGTGTTTTTTATGTAAGAATTTCATTGATGCA
CGCAAATATGGAGATGGTGGAAGAATTGTGAGACTATATAAGTATTTTAC
ATTATACTTCAGGGTCAATAACCAATACAAATATGCTGGTCAATCCTTGC
ATATTCTTGCTCAAATTAAAGCTCTATTACCACCTGCACTTGCCTTTGAG
ATGACCTGGAATCGTTCAGTCAATACAAAAGGTAAACCAGATTCAAA Run BLAST on NCBI protein sequence of TCONS_00040428-protein >TCONS_00040428-protein ID=TCONS_00040428-protein|Name=TCONS_00040428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=348bp
YPRGVKTPYQKLFAFSEEPILVHKHLHYIIHIFNFQHSLGLLNKSEQTTE
GIIDIMEEQHKIVPKLRNGNVRTFTAGDLLTVEREQNAQIDKEDSFTSSQ
RLEGLIPVLADFHTYGNFLELIWAILYDPASSADVGTLFQVRNYLNARNV
KSEPMKSVNACEDLMMKYSEALIVTAFQTYCKEKGIDFSRHSTREAEFKK
AISEVVSEFVLPDTNDMSKIVTQFDCTECKSQFKTLKNLKKHLKEKHENK
KYHPPASPNTDRKMNYLRNALALCFLCKNFIDARKYGDGGRIVRLYKYFT
LYFRVNNQYKYAGQSLHILAQIKALLPPALAFEMTWNRSVNTKGKPDS Run BLAST on NCBI transcript from alignment at sc0002425:10193..11522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040428 ID=TCONS_00040428|Name=TCONS_00040428|organism=Clytia hemisphaerica|type=transcript|length=1330bp|location=Sequence derived from alignment at sc0002425:10193..11522+ (Clytia hemisphaerica)
TTACCCAAGAGGAGTCAAGACACCATATCAAAAACTGTTTGCTTTTAGCG
AAGAACCTATTTTGGTACATAAGCATCTGCACTATATTAttcatattttt
aattttcagcatTCCCTTGGTCTGCTCAACAAAAGTGAACAAACCACTGA
AGGAATCATTGACATCATGGAAGAACAACACAAGATTGTACCGAAACTCC
GGAATGGAAATGTGAGGACGTTCACTGCTGGAGATCTCTTGACAGTTGAA
CGTGAACAAAATGCACAAATTGATAAAGAAGACAGCTTCACCTCATCTCA
ACGTTTAGAAGGATTGATTCCAGTTCTGGCTGATTTTCATACatatggaa
attttttagaGGTAAACAATACGTATTATTGTATTAAACCGTAGAGACGC
TTTTTTCAAGAATGTCCTTCACCCTCAAGAAAGTGCAAACAAGCTAAATT
CTAAAAAGATATCCACTAGGGAACAAAATTAACACTTAGTTGcttttttg
tttcctttctcGTGAAAAAGATAATTTCTATCATTATTTTCCATGATTCA
AAGCAAAGCACAATAAAACACAAGGCAAACACTACATAGTCTTGATATTT
ATCATAAACTTTGTATAAGAAAAATCTTATGTCTTCTTTTCAAGCTTATT
TGGGCCATTCTATACGACCCAGCTTCAAGTGCTGATGTGGGAACATTGTT
TCAAGTTCGCAACTACTTGAATGCAAGAAACGTGAAATCAGAGCCAATGA
AAAGTGTTAACGCCTGTGAAGACCTAATGATGAAGTATTCTGAAGCATTG
ATCGTTACAGCTTTTCAAACATACTGCAAAGAGAAAGGCATCGACTTCTC
AAGACATAGTACACGTGAAGCTGAATTCAAAAAAGCCATCTCAGAAGTTG
TCTCAGAGTTTGTCTTGCCCGACACAAACGACATGTCGAAGATCGTGACT
CAATTTGACTGCACAGAATGTAAGAGTCAGTTCAAAACgctgaaaaatct
gaaaaagcaCCTGAAAGAAAAACACGAAAACAAGAAGTACCATCCACCAG
CATCACCAAACACAGACCGCAAGATGAACTACTTACGAAATGCTCTCGCT
CTGTGTTTTTTATGTAAGAATTTCATTGATGCACGCAAATATGGAGATGG
TGGAAGAATTGTGAGACTATATAAGTATTTTACATTATACTTCAGGGTCA
ATAACCAATACAAATATGCTGGTCAATCCTTGCATATTCTTGCTCAAATT
AAAGCTCTATTACCACCTGCACTTGCCTTTGAGATGACCTGGAATCGTTC
AGTCAATACAAAAGGTAAACCAGATTCAAA Coding sequence (CDS) from alignment at sc0002425:10193..11522+ >TCONS_00040428 ID=TCONS_00040428|Name=TCONS_00040428|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0002425:10193..11522+ (Clytia hemisphaerica)
TACCCAAGAGGAGTCAAGACACCATATCAAAAACTGTTTGCTTTTAGCGA
AGAACCTATTTTGGTACATAAGCATCTGCACTATATTAttcatattttta
attttcagcatTCCCTTGGTCTGCTCAACAAAAGTGAACAAACCACTGAA
GGAATCATTGACATCATGGAAGAACAACACAAGATTGTACCGAAACTCCG
GAATGGAAATGTGAGGACGTTCACTGCTGGAGATCTCTTGACAGTTGAAC
GTGAACAAAATGCACAAATTGATAAAGAAGACAGCTTCACCTCATCTCAA
CGTTTAGAAGGATTGATTCCAGTTCTGGCTGATTTTCATACatatggaaa
ttttttagaGCTTATTTGGGCCATTCTATACGACCCAGCTTCAAGTGCTG
ATGTGGGAACATTGTTTCAAGTTCGCAACTACTTGAATGCAAGAAACGTG
AAATCAGAGCCAATGAAAAGTGTTAACGCCTGTGAAGACCTAATGATGAA
GTATTCTGAAGCATTGATCGTTACAGCTTTTCAAACATACTGCAAAGAGA
AAGGCATCGACTTCTCAAGACATAGTACACGTGAAGCTGAATTCAAAAAA
GCCATCTCAGAAGTTGTCTCAGAGTTTGTCTTGCCCGACACAAACGACAT
GTCGAAGATCGTGACTCAATTTGACTGCACAGAATGTAAGAGTCAGTTCA
AAACgctgaaaaatctgaaaaagcaCCTGAAAGAAAAACACGAAAACAAG
AAGTACCATCCACCAGCATCACCAAACACAGACCGCAAGATGAACTACTT
ACGAAATGCTCTCGCTCTGTGTTTTTTATGTAAGAATTTCATTGATGCAC
GCAAATATGGAGATGGTGGAAGAATTGTGAGACTATATAAGTATTTTACA
TTATACTTCAGGGTCAATAACCAATACAAATATGCTGGTCAATCCTTGCA
TATTCTTGCTCAAATTAAAGCTCTATTACCACCTGCACTTGCCTTTGAGA
TGACCTGGAATCGTTCAGTCAATACAAAAGGTAAACCAGATTCATACCCA
AGAGGAGTCAAGACACCATATCAAAAACTGTTTGCTTTTAGCGAAGAACC
TATTTTGGTACATAAGCATCTGCACTATATTAttcatatttttaattttc
agcatTCCCTTGGTCTGCTCAACAAAAGTGAACAAACCACTGAAGGAATC
ATTGACATCATGGAAGAACAACACAAGATTGTACCGAAACTCCGGAATGG
AAATGTGAGGACGTTCACTGCTGGAGATCTCTTGACAGTTGAACGTGAAC
AAAATGCACAAATTGATAAAGAAGACAGCTTCACCTCATCTCAACGTTTA
GAAGGATTGATTCCAGTTCTGGCTGATTTTCATACatatggaaatttttt
agaGCTTATTTGGGCCATTCTATACGACCCAGCTTCAAGTGCTGATGTGG
GAACATTGTTTCAAGTTCGCAACTACTTGAATGCAAGAAACGTGAAATCA
GAGCCAATGAAAAGTGTTAACGCCTGTGAAGACCTAATGATGAAGTATTC
TGAAGCATTGATCGTTACAGCTTTTCAAACATACTGCAAAGAGAAAGGCA
TCGACTTCTCAAGACATAGTACACGTGAAGCTGAATTCAAAAAAGCCATC
TCAGAAGTTGTCTCAGAGTTTGTCTTGCCCGACACAAACGACATGTCGAA
GATCGTGACTCAATTTGACTGCACAGAATGTAAGAGTCAGTTCAAAACgc
tgaaaaatctgaaaaagcaCCTGAAAGAAAAACACGAAAACAAGAAGTAC
CATCCACCAGCATCACCAAACACAGACCGCAAGATGAACTACTTACGAAA
TGCTCTCGCTCTGTGTTTTTTATGTAAGAATTTCATTGATGCACGCAAAT
ATGGAGATGGTGGAAGAATTGTGAGACTATATAAGTATTTTACATTATAC
TTCAGGGTCAATAACCAATACAAATATGCTGGTCAATCCTTGCATATTCT
TGCTCAAATTAAAGCTCTATTACCACCTGCACTTGCCTTTGAGATGACCT
GGAATCGTTCAGTCAATACAAAAGGTAAACCAGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040428-exon-sc0002425-1491911889:10193..10553 | TCONS_00040428-exon-sc0002425-1491911889:10193..10553 | Clytia hemisphaerica | exon |
| TCONS_00040428-exon-sc0002425-1510915933:10193..10553 | TCONS_00040428-exon-sc0002425-1510915933:10193..10553 | Clytia hemisphaerica | exon |
| TCONS_00040428-exon-sc0002425-1575043694:10193..10553 | TCONS_00040428-exon-sc0002425-1575043694:10193..10553 | Clytia hemisphaerica | exon |
| TCONS_00040428-exon-sc0002425-1491911889:10837..11522 | TCONS_00040428-exon-sc0002425-1491911889:10837..11522 | Clytia hemisphaerica | exon |
| TCONS_00040428-exon-sc0002425-1510915933:10837..11522 | TCONS_00040428-exon-sc0002425-1510915933:10837..11522 | Clytia hemisphaerica | exon |
| TCONS_00040428-exon-sc0002425-1575043694:10837..11522 | TCONS_00040428-exon-sc0002425-1575043694:10837..11522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002425 | supercontig | sc0002425:10193..11522 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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