TCONS_00040427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040427
Unique NameTCONS_00040427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040427 ID=TCONS_00040427|Name=TCONS_00040427|organism=Clytia hemisphaerica|type=transcript|length=323bp
TAAAAGGACTTCAGAATTTCTACCCAGCGATTTCGACACCTCTATGTCAC
AGAGCCGCTGGGACCCCCGcccaactggaaaatttgacaaaaatttcgtc
ccggtgggaaaaaacctgaaatttcagtcccactgctggtaaattgactt
tgattcctTCCCCATTCGAAATAAACTATCCGCACTGAAATTATTATCCC
CAATGAGGAAAAAAGtaccaccggggctgtgagacaggggtgtatttcaT
TTTGTGGTTTATTTTATAACTACTATCGAGTTTTTTAGAACTTTTGTAGA
TAGCTTATTTTTGTTAATAATTT
Run BLAST on NCBI

transcript from alignment at sc0002424:15866..16188

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040427 ID=TCONS_00040427|Name=TCONS_00040427|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0002424:15866..16188 (Clytia hemisphaerica)
AAATTATTAACAAAAATAAGCTATCTACAAAAGTTCTAAAAAACTCGATA
GTAGTTATAAAATAAACCACAAAAtgaaatacacccctgtctcacagccc
cggtggtaCTTTTTTCCTCATTGGGGATAATAATTTCAGTGCGGATAGTT
TATTTCGAATGGGGAaggaatcaaagtcaatttaccagcagtgggactga
aatttcaggttttttcccaccgggacgaaatttttgtcaaattttccagt
tgggCGGGGGTCCCAGCGGCTCTGTGACATAGAGGTGTCGAAATCGCTGG
GTAGAAATTCTGAAGTCCTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024577XLOC_024577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040427-exon-sc0002424-1491911889:15866..16188TCONS_00040427-exon-sc0002424-1491911889:15866..16188Clytia hemisphaericaexon
TCONS_00040427-exon-sc0002424-1510915933:15866..16188TCONS_00040427-exon-sc0002424-1510915933:15866..16188Clytia hemisphaericaexon
TCONS_00040427-exon-sc0002424-1575043694:15866..16188TCONS_00040427-exon-sc0002424-1575043694:15866..16188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002424supercontigsc0002424:15866..16188 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.345854	0	0	0	0	0	0.374545	2.58325	0.362636	0.732735	0.561986	0	0.76032	0.375278	0	0	0	0.661588	0	0	0	0	0	0.334103	0.894537	0	0.493109	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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