TCONS_00040423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040423
Unique NameTCONS_00040423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040423 ID=TCONS_00040423|Name=TCONS_00040423|organism=Clytia hemisphaerica|type=transcript|length=882bp
TTTTCAGTACACTTTTTTGTGAGACACCCTGTAGCTGTACGACCCTGTAT
CATAGACAAATTTTACCATGAATTACATACCTTTTGACTTTGAACTTTCA
TTCATTTCTGGTGAAAAGGTTTGTTTTCCActtcatttttgattaaaacC
AACATTCTGAGGGTTTCACGTTTTAAAATAACAGCCTCGACTTCAAAAAG
GGTATCCGTCGGTCACCCGTTGGTAGTGCGTCGGTCGTCGGTCACCCGTT
GGTGGTGCGTCGGTTACCCGTTGGCTTTGTGTTGGTCAATCGACGGGTTA
CGTTCGAATATCACTTTTATCACTACCATTTCCTGTCCTAATGACGCATT
CGTTTGATTCGAATCATGGTTTATAATTACCAGTCAGTTCAATCAAGTTC
GGTCTTTTTGGTTTTACATTTTTACTGGAGTCACTTGTCAATTTTATCAg
caaaactttttaataaaatggcCAACAACATTAACGAGTCATCGCCGGTA
GATTACATTCAAAAAGTGAATGATTGCGTCAATGATAGGCAGTTTATAGA
TATGCTAGTATCTCATAATTGGCTTAATAACGGCAGGATACATCCGTTAT
ATGATCCagtagttttgatttttttaaaagagtATTTTGTTGCCAATGAA
ttaaaaaagcaacaaaacCAAATGCAAGTCCAATTTGACCAACCATCAAC
CACCAACCAGACTTATGATGAGAAACGATTTTTTAAAAGAGGTACTGGAA
GCCATAGAAAATTAATGATTCTTATGAACGATGAAATCGAAAAACGCGAT
TTGAGCAAGAAAACGCCAGAAGCCGTCGCAAACCGCATAAGGGATGATGT
TGCAACCTCGttaATCCGAACTTTAAAAATGC
Run BLAST on NCBI

protein sequence of TCONS_00040423-protein

>TCONS_00040423-protein ID=TCONS_00040423-protein|Name=TCONS_00040423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MVYNYQSVQSSSVFLVLHFYWSHLSILSAKLFNKMANNINESSPVDYIQK
VNDCVNDRQFIDMLVSHNWLNNGRIHPLYDPVVLIFLKEYFVANELKKQQ
NQMQVQFDQPSTTNQTYDEKRFFKRGTGSHRKLMILMNDEIEKRDLSKKT
PEAVANRIRDDVATSLIRTLKM
Run BLAST on NCBI

transcript from alignment at sc0002423:14077..17669-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040423 ID=TCONS_00040423|Name=TCONS_00040423|organism=Clytia hemisphaerica|type=transcript|length=3593bp|location=Sequence derived from alignment at sc0002423:14077..17669- (Clytia hemisphaerica)
TTTTCAGTACACTTTTTTGTGAGACACCCTGTAGCTGTACGACCCTGTAT
CATAGACAAATTTTACCATGAATTACATACCTTTTGACTTTGAACTTTCA
TTCATTTCTGGTGAAAAGGTTTGTTTTCCACTTCATTTTTGATTAAAACC
AACATTCTGAGGGTTTCACGTTTTAAAATAACAGCCTCGACTTCAAAAAG
GGTATCCGTCGGTCACCCGTTGGTAGTGCGTCGGTCGTCGGTCACCCGTT
GGTGGTGCGTCGGTTACCCGTTGGCTTTGTGTTGGTCAATCGACGGGTTA
CGTTCGAATATCACTTTTATCACTACCATTTCCTGTCCTAATGACGCATT
CGTTTGATTCGAATCATGGTTTATAATTACCAGTCAGTTCAATCAAGTTC
GGTCTTTTTGGTTTTACATTTTTACTGGAGTCACTTGTCAATTTTATCAG
CAAAACTTTTTAATAAAATGGCCAACAACATTAACGAGTCATCGCCGGTA
GATTACATTCAAAAAGTGAATGATTGCGTCAATGATAGGCAGTTTATAGA
TATGCTAGTATCTCATAATTGGCTTAATAACGGCAGGATACATCCGTTAT
ATGATCCAGTAGTTTTGATTTTTTTAAAAGAGTATTTTGTTGCCAATGAA
TTAAAAAAGCAACAAAACCAAATGCAAGTCCAATTTGACCAACCATCAAC
CACCAACCAGACTTATGATGAGAAACGATTTTTTAAAAGAGGTACTGGAA
GCCATAGAAAATTAATGGTAAGTGACGTTTAAGTTTGTTGATTAGCTATT
TATATTTTTAACTTACAAAAATGTCAAATATTCGGGTCGAATACGATTTC
TTAAGTTTAAAGATACTTTTAGATTTCGTTGAAACTGTCCTTTTTATTAG
TATAATTAAAATTTTTAAGTAGATATGCAAACTAAATATTACAGAAGGTA
TCGAACTTGTAACCTCAATGCTACATCACATCGTATCTTACCACTACACC
ACGATTACATTCGAAGTCACGAAAAACAAAATGCTTAAATTCGAATTTAT
TATAACATCGAATTTTTGGAAATGAAACAAAGATTTTTGTTCGAATTTAT
TTCGATACTTAATAAAAAAATTCTTTTTTCAAAAACTGAGCAATTGCTAG
GGAGGGTGATACACTTTTTTTATAAGAACATCTAAAGTTTTTGAAGCATT
GAGATATGTTCTTAACTTTTTGGATTTGAACCGTACAAATGTTCTGAACA
TGTACTTATTTTCGCTATTTTCTCGTGTATTTGTGTCCATTTTCCTAAGA
AATCGGGTGTTTTAGAGACAGCAAAGCTCTAAAATGTTCTTAACTTGCTC
TTAATATGTTGGCGATCGAAGCCTTATGTTGTTATANCTTACCACTACAC
CACGATTACATTCGAAGTCTTGAAAAACAAAAAGCTTAAATTCGAATTTA
TTATAACATCGAATTTTTGGAAATGAAACAAAGATTTTTGTTCGAATTGA
TTTCGATACTTAATAAAAACTTTCTTTTTTCAAAAACTGAGCAATTGCTA
GGGTGATACACGTTTCATCTAAAGTTTTTGAAGCATTGAGATATGTTCTT
AACTTTTTGGATTTGAACCGTACAAATGTTCTGAACATGTACTTATTTTC
GCCATTTTTTCGTGTATTTGTGTCCATTTTCCTAAGAAATCGGGTGTTTT
AGAGACAGCAAAGCTCTAAAATGTTCTTAACTTGCTCTTAATATGTTGGC
GATCGAAGCCTTATGTTCTTATAGTGGGGGGCGTACGATCTGGCAGTATT
CGGGATAAGGCCTAATTTATGGCCGGGAAGCGGAAAAACGATAAAAAGTG
TTCGGGAAACGGTATTTTGCAAGAGCCACGGTGACGGTAAAACACCTGAT
TTTTCGTCCGGGATGAGGTAATTCTTATAAAAAACAACGGTATTTCGGTA
AAAGCCATACTTAGACGATGTACATAAAATTTTCGGACTATAAAAAAGCT
TGTCACAGAAGTCAGCAAAGGTGAAAAAACGCGAAAAACACCCAAAAAAC
AAGGATCTTACATTTAATAATAAACCTTATTTGAAACGTTAATGCAGATG
TGCACGGGGCTTTATAAAGCCCGGTTCCTATGAAAACGCTAGAAAAACGT
TTTGTTCGCGGAGAAAGTAGGCTACGTCATATCTCCTTTATTCCACTTAA
GCTTCTCTTCGAAGAGAAAAAGTTTTACGTCCGAGCGCAGGAGATATGAC
CTCAGCCTAGGATAAACCAGACAAAGATTCGAATTTTTGAATGTTTTTTT
TTTTGAATTCGATCAGCTTGTCCTGTCACCTCGAAACTTTGGGGTAGGCT
GGAGTCTACTGGGGTGTTTCTTTTATTCAATGATTTATCATAGCCCAAAG
GGCTAGATTTGCAGCTTTAACCCGCGCTTTAACCTTTATCCAGCAAAAAA
AATGAAGCACGATTTTGTGACCTAATTGAATTTCGAGGTGATGGATAGGA
TCTAGCATTTTCATTGTTCTCGGAGTGCGAGACCAAGAAAATTAGGTGGT
AAACGCTATTTCGCATCTCTCAAACCAGTAAAATTGCATGATTTTAGTCA
GGTGACTTTGGTAGGAAATCCTACCAAAGCCCAAACAAGGATGAGACAAA
CAAGAATGAGCTTCACTTTTCGATCCAGGCCGCAAATCTAGCCCTTCCGG
CTTTACAGATATCTGTGTTTTTTTTCATTTTTTCACAGTTTTGATTTCTT
TGGGCGTGGTCACAAGTTTTAGCCTCAAAACGAGGCTAAACTTTGGGGCA
GACTAGAAACTTCTAAAATTGTCTGATTAGGCTGAAATTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTGCAATCGAAACAAAATACAAAAATAGTGAT
CGACCTCATACACATTCTATTCCATTTTGCCGAATTTTTGACTTCTAGTC
CTTAGAATTTTATGGGAAAATTAGCGGGACCGGTATTTTCAAAATATTTG
GCCGGGATGGCGGTAATTCGAAACCTCGTACGCCCCCCACCTTATATAGT
TCGTTCCTATGATAAAAAAACGTGTAATATGGACTAGATTGATTTCAAGC
TTTTTTATTTTATTTCTTTTTAAATCAGATTCTTATGAACGATGAAATCG
AAAAACGCGATTTGAGCAAGAAAACGCCAGAAGCCGTCGCAAACCGCATA
AGGGATGATGTTGCAACCTCGGTAATCATTTATTTGTCATGCCCTAGTTC
AGTAATAAAAGAATCTTTCATACTTGCTTTAAATCATTAACATATCCATT
TTCTCAACAGTTTTCGAATGGCATAGTAGAAATGAAGTTGACTGTCTTTG
CATTAACCTTGCCCAATTTTTACGTGCAGTAAACTTTAGAACCATCTGAA
ATAACTCGATAAACTACAATTTAAGTTATATTTTTTCAGCATTTTATGAT
GTATCTTATTATTTTTTTTAGTTAATCCGAACTTTAAAAATGC

Coding sequence (CDS) from alignment at sc0002423:14077..17669-

>TCONS_00040423 ID=TCONS_00040423|Name=TCONS_00040423|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0002423:14077..17669- (Clytia hemisphaerica)
TTAATCCGAACTTTAAAAATGATTCTTATGAACGATGAAATCGAAAAACG
CGATTTGAGCAAGAAAACGCCAGAAGCCGTCGCAAACCGCATAAGGGATG
ATGTTGCAACCTCGATGGTTTATAATTACCAGTCAGTTCAATCAAGTTCG
GTCTTTTTGGTTTTACATTTTTACTGGAGTCACTTGTCAATTTTATCAGC
AAAACTTTTTAATAAAATGGCCAACAACATTAACGAGTCATCGCCGGTAG
ATTACATTCAAAAAGTGAATGATTGCGTCAATGATAGGCAGTTTATAGAT
ATGCTAGTATCTCATAATTGGCTTAATAACGGCAGGATACATCCGTTATA
TGATCCAGTAGTTTTGATTTTTTTAAAAGAGTATTTTGTTGCCAATGAAT
TAAAAAAGCAACAAAACCAAATGCAAGTCCAATTTGACCAACCATCAACC
ACCAACCAGACTTATGATGAGAAACGATTTTTTAAAAGAGGTACTGGAAG
CCATAGAAAATTAATGTTAATCCGAACTTTAAAAATGATTCTTATGAACG
ATGAAATCGAAAAACGCGATTTGAGCAAGAAAACGCCAGAAGCCGTCGCA
AACCGCATAAGGGATGATGTTGCAACCTCGATGGTTTATAATTACCAGTC
AGTTCAATCAAGTTCGGTCTTTTTGGTTTTACATTTTTACTGGAGTCACT
TGTCAATTTTATCAGCAAAACTTTTTAATAAAATGGCCAACAACATTAAC
GAGTCATCGCCGGTAGATTACATTCAAAAAGTGAATGATTGCGTCAATGA
TAGGCAGTTTATAGATATGCTAGTATCTCATAATTGGCTTAATAACGGCA
GGATACATCCGTTATATGATCCAGTAGTTTTGATTTTTTTAAAAGAGTAT
TTTGTTGCCAATGAATTAAAAAAGCAACAAAACCAAATGCAAGTCCAATT
TGACCAACCATCAACCACCAACCAGACTTATGATGAGAAACGATTTTTTA
AAAGAGGTACTGGAAGCCATAGAAAATTAATGTTAATCCGAACTTTAAAA
ATGATTCTTATGAACGATGAAATCGAAAAACGCGATTTGAGCAAGAAAAC
GCCAGAAGCCGTCGCAAACCGCATAAGGGATGATGTTGCAACCTCGATGG
TTTATAATTACCAGTCAGTTCAATCAAGTTCGGTCTTTTTGGTTTTACAT
TTTTACTGGAGTCACTTGTCAATTTTATCAGCAAAACTTTTTAATAAAAT
GGCCAACAACATTAACGAGTCATCGCCGGTAGATTACATTCAAAAAGTGA
ATGATTGCGTCAATGATAGGCAGTTTATAGATATGCTAGTATCTCATAAT
TGGCTTAATAACGGCAGGATACATCCGTTATATGATCCAGTAGTTTTGAT
TTTTTTAAAAGAGTATTTTGTTGCCAATGAATTAAAAAAGCAACAAAACC
AAATGCAAGTCCAATTTGACCAACCATCAACCACCAACCAGACTTATGAT
GAGAAACGATTTTTTAAAAGAGGTACTGGAAGCCATAGAAAATTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024573XLOC_024573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040423-proteinTCONS_00040423-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040423-exon-sc0002423-1575043694:16903..17669TCONS_00040423-exon-sc0002423-1575043694:16903..17669Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1575043694:14349..14441TCONS_00040423-exon-sc0002423-1575043694:14349..14441Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1575043694:14077..14098TCONS_00040423-exon-sc0002423-1575043694:14077..14098Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1510915933:16903..17669TCONS_00040423-exon-sc0002423-1510915933:16903..17669Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1510915933:14349..14441TCONS_00040423-exon-sc0002423-1510915933:14349..14441Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1510915933:14077..14098TCONS_00040423-exon-sc0002423-1510915933:14077..14098Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1491911889:16903..17669TCONS_00040423-exon-sc0002423-1491911889:16903..17669Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1491911889:14349..14441TCONS_00040423-exon-sc0002423-1491911889:14349..14441Clytia hemisphaericaexon
TCONS_00040423-exon-sc0002423-1491911889:14077..14098TCONS_00040423-exon-sc0002423-1491911889:14077..14098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002423supercontigsc0002423:14077..17669 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0583949	0	0	0.0677745	0.126899	0.0444226	0.165074	0.160225	0.0351084	0.0701193	0	0	0.0321235	0	0	0	0	0	0	0.0604429	0.0549514	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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