TCONS_00040422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040422
Unique NameTCONS_00040422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length927

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040422 ID=TCONS_00040422|Name=TCONS_00040422|organism=Clytia hemisphaerica|type=transcript|length=927bp
TTTAAAATATCGTAATTCGACCACATCTTCtccatttttatcttttgaca
CGGCCAGAACAACAGCAAACTCCAATTTCCGATATACCACCGCTACATTA
TTGGAATATTGATATCATAAGGTGGGTATTCCTTAATGCCTTCGAACCAC
TTATTCGTGTTCTTTGGAGAGGAAAAAAGGATAGGGGATGTAGGAGATGT
AGGTAAGGTTACAGTTGTAGAAGTCAAAGAAGTAGGAGACGCTGAAACAG
CAGAGTTAGAAGTAGGAGTGGAAGAAAGATTAGTAGAAGAAGTATTTAAA
GGAACAAGCAGAAGAGAGTCTGAAACAGACGTGACAGTGGTTCGAGTGGC
AGGAGCAGTTGAAGAAAGGTTAGTGGAAGAAGCGGAAACGACAGAGCTGG
AAGTAGGAGTGGCAGGAGTAGTGAAAGAAAGGTTAGTAGAAGAAGTATTC
AAAGGAGAGTCGATGTCTTTCTCTGCTTGTCTGATACGTTTGATTTCAGC
TCTTGAAACTCCCATNAAGCAGTGGACGAAGAAAGGTTAGTAGAAGAAGT
TTTCAAAGGAGAGTCGATGTCTTTCTCTGCTTGTCTGATACGTTTGATTT
CAGCTCTTGAAACTCCCATTTCTTCGGCTTCGAtactaaaacaaaagaaa
aaaattagaattacATCGGAGATCTTTCTTCAAACATAAcgtgagaaaat
tttaaattcagaTGTTACCCAAGAACCATTAAAGATCCGACATACAAGTT
TTTCTGTAAGAATAATGcgttttcatcaaattttacaaTATTCTTAGTTT
AATCAAAATCCAAAATCCAATCCtaacattcttataaagcaaaAAGCCTT
TTTTTTGTATTggtttttcttcgaaaatacaaaattgaaagaaatactTC
AGGAAAAACTTTTCGTATGTAAAATAA
Run BLAST on NCBI

transcript from alignment at sc0002423:12267..13775+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040422 ID=TCONS_00040422|Name=TCONS_00040422|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at sc0002423:12267..13775+ (Clytia hemisphaerica)
TTTAAAATATCGTAATTCGACCACATCTTCtccatttttatcttttgaca
CGGCCAGAACAACAGCAAACTCCAATTTCCGATATACCACCGCTACATTA
TTGGAATATTGATATCATAAGGTGGGTATTCCTTAATGCCTTCGAACCAC
TTATTCGTGTTCTTTGGAGAGGAAAAAAGGATAGGGGATGTAGGAGATGT
AGGTAAGGTTACAGTTGTAGAAGTCAAAGAAGTAGGAGACGCTGAAACAG
CAGAGTTAGAAGTAGGAGTGGAAGAAAGATTAGTAGAAGAAGTATTTAAA
GGAACAAGCAGAAGAGAGTCTGAAACAGACGTGACAGTGGTTCGAGTGGC
AGGAGCAGTTGAAGAAAGGTTAGTAAAAAAAGCGGAAACGACAGAGCTGG
AAGTAGGAGTGGCAGAAGCAGTGGAAGAAATGGTCAAAGGAACAAGTAGA
AGAGAGTCTGTAGCAGACGTGACAGTGGCTCGAGTGGCAGGAACAGTTGA
AGAAAGGTTAGTGGAAGAAGCGGAAACGACAGAGCTGGAAGTAGGAGTGG
CAGGAGTAGTGAAAGAAAGGTCACATATTCTAACATTTGATACATACCAT
GAAGTAGGAGTGGCAGGAGTAGTGAAAGAAAGGTCACATATTCTAACATT
TGATACATACCATGAAGTAGGAGTGGCAGGAGTAGTGAAAGAAAGGTTAG
TGGAAGAAGCGGAAACGACAGAGCTGGAAGTAGGAGTGGCAGGAGTAGTG
AAAGAAAGGTTAGTGGAAGAAGCGGAAACGACAAAGCTGGAAGTAGGAGT
GACAGGAGTAGTGAAAGAAAGGTTAGTGGAAGAAGCGGAAACGACAGAGC
TGGAAGTAGGTGTGGCAGGAGTAGTGAAAGAAAGGTTAGTGGAAGAAGCG
GAAACGACAGAGCTGGAAGTAGGAGTGGCAGGAGTAGTGAAAGAAAGGTT
AGTGGAAGAAGCGGAAACGACAGAGCTGGAAGTAGAAGTGGCAGGAGTAG
TGAAAGAAGAAAGGTTAGTAGAAGAAGTATTCAAAGGAGAGTCGATGTCT
TTCTCTGCTTGTCTGATACGTTTGATTTCAGCTCTTGAAACTCCCATNAA
GCAGTGGACGAAGAAAGGTTAGTAGAAGAAGTTTTCAAAGGAGAGTCGAT
GTCTTTCTCTGCTTGTCTGATACGTTTGATTTCAGCTCTTGAAACTCCCA
TTTCTTCGGCTTCGAtactaaaacaaaagaaaaaaattagaattacATCG
GAGATCTTTCTTCAAACATAAcgtgagaaaattttaaattcagaTGTTAC
CCAAGAACCATTAAAGATCCGACATACAAGTTTTTCTGTAAGAATAATGc
gttttcatcaaattttacaaTATTCTTAGTTTAATCAAAATCCAAAATCC
AATCCtaacattcttataaagcaaaAAGCCTTTTTTTTGTATTggttttt
cttcgaaaatacaaaattgaaagaaatactTCAGGAAAAACTTTTCGTAT
GTAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024572XLOC_024572Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040422-exon-sc0002423-1491911889:12267..12634TCONS_00040422-exon-sc0002423-1491911889:12267..12634Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1510915933:12267..12634TCONS_00040422-exon-sc0002423-1510915933:12267..12634Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1575043694:12267..12634TCONS_00040422-exon-sc0002423-1575043694:12267..12634Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1491911889:13088..13125TCONS_00040422-exon-sc0002423-1491911889:13088..13125Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1510915933:13088..13125TCONS_00040422-exon-sc0002423-1510915933:13088..13125Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1575043694:13088..13125TCONS_00040422-exon-sc0002423-1575043694:13088..13125Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1491911889:13189..13213TCONS_00040422-exon-sc0002423-1491911889:13189..13213Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1510915933:13189..13213TCONS_00040422-exon-sc0002423-1510915933:13189..13213Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1575043694:13189..13213TCONS_00040422-exon-sc0002423-1575043694:13189..13213Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1491911889:13280..13775TCONS_00040422-exon-sc0002423-1491911889:13280..13775Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1510915933:13280..13775TCONS_00040422-exon-sc0002423-1510915933:13280..13775Clytia hemisphaericaexon
TCONS_00040422-exon-sc0002423-1575043694:13280..13775TCONS_00040422-exon-sc0002423-1575043694:13280..13775Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002423supercontigsc0002423:12267..13775 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148236	0.0963688	0	0	0	0	0	0.356838	0.0331901	0.206304	0.0500609	0	0.282181	0.507305	0.252519	0.0541111	0	0.228117	0	0.0549646	0.122047	0.0699078	0.0566547	0.0515074	0	0	0	0.0723084	0	0.111753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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