TCONS_00040419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040419
Unique NameTCONS_00040419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040419 ID=TCONS_00040419|Name=TCONS_00040419|organism=Clytia hemisphaerica|type=transcript|length=366bp
ATGGACTTCCTTGTCCAACACAACAAGACTGTGTCAAACGAATTTGCAAA
AAGGAACGTACTCCCTTATCAATAATTACAAAAGACAATATTTATCCCAT
AATAAACAATGAAAAAGGTGCAGATGTAGCTGATCGATTCGTGAATGGAC
TTTGTAAAGTTGGGCTTGGTACTATTATCGGTGATAAACAAAAAGTATTC
AAGCGATTCCACCCTGATGATATAGAATGTCCTGATAAAGAAAATGTAAA
GTCTAAATGGCAAAAACTTAACTTGTTTTAAATAGATaacattatttttg
atttttgaatttttgaattttgaaattttgaaactatCTTGATCCTTTTT
TAAGGTTTGGTTCGCC
Run BLAST on NCBI

transcript from alignment at sc0002422:16349..16714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040419 ID=TCONS_00040419|Name=TCONS_00040419|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0002422:16349..16714 (Clytia hemisphaerica)
GGCGAACCAAACCTTAAAAAAGGATCAAGatagtttcaaaatttcaaaat
tcaaaaattcaaaaatcaaaaataatgttATCTATTTAAAACAAGTTAAG
TTTTTGCCATTTAGACTTTACATTTTCTTTATCAGGACATTCTATATCAT
CAGGGTGGAATCGCTTGAATACTTTTTGTTTATCACCGATAATAGTACCA
AGCCCAACTTTACAAAGTCCATTCACGAATCGATCAGCTACATCTGCACC
TTTTTCATTGTTTATTATGGGATAAATATTGTCTTTTGTAATTATTGATA
AGGGAGTACGTTCCTTTTTGCAAATTCGTTTGACACAGTCTTGTTGTGTT
GGACAAGGAAGTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024570XLOC_024570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040419-exon-sc0002422-1491911889:16349..16714TCONS_00040419-exon-sc0002422-1491911889:16349..16714Clytia hemisphaericaexon
TCONS_00040419-exon-sc0002422-1510915933:16349..16714TCONS_00040419-exon-sc0002422-1510915933:16349..16714Clytia hemisphaericaexon
TCONS_00040419-exon-sc0002422-1575043694:16349..16714TCONS_00040419-exon-sc0002422-1575043694:16349..16714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002422supercontigsc0002422:16349..16714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.677919	0.881437	0.511716	0.500634	3.65684	1.92646	2.03367	1.63191	0.380846	0.943478	0.686822	0.300993	0.751437	0.31215	1.02652	1.65242	0.848185	0.869362	0	0	0.218483	1.19331	0.518192	0.471112	23.5339	10.61	0.619707	0.992053	1.00325	0.511076
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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