TCONS_00040418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040418
Unique NameTCONS_00040418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040418 ID=TCONS_00040418|Name=TCONS_00040418|organism=Clytia hemisphaerica|type=transcript|length=304bp
cgaaacatcaaatccagaagaagacttcatcatcaaccatttcttgtgac
aatcacacaaaaagtcatgatccaattcaactctttaactaagcataaaa
accaaagaaaaattgcaaaagagCAACATGCCAGGATGATCCAAATCAAT
GCCATTCCAATCCACACCCACAGCAAGCTGGCAAGAAGAGAATATAGGTA
GCTAATAGCAACCGGTTTAAATAAGTTGGTGATTGTAATGTAAAAGCTGG
ATTGATGGCATTAATCTATATGTTTCTATTGGTATGTCAGAGAACTTCAT
AGAA
Run BLAST on NCBI

transcript from alignment at sc0002422:11328..11631

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040418 ID=TCONS_00040418|Name=TCONS_00040418|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0002422:11328..11631 (Clytia hemisphaerica)
TTCTATGAAGTTCTCTGACATACCAATAGAAACATATAGATTAATGCCAT
CAATCCAGCTTTTACATTACAATCACCAACTTATTTAAACCGGTTGCTAT
TAGCTACCTATATTCTCTTCTTGCCAGCTTGCTGTGGGTGTGGATTGGAA
TGGCATTGATTTGGATCATCCTGGCATGTTGctcttttgcaatttttctt
tggtttttatgcttagttaaagagttgaattggatcatgactttttgtgt
gattgtcacaagaaatggttgatgatgaagtcttcttctggatttgatgt
ttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024569XLOC_024569Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040418-exon-sc0002422-1491911889:11328..11631TCONS_00040418-exon-sc0002422-1491911889:11328..11631Clytia hemisphaericaexon
TCONS_00040418-exon-sc0002422-1510915933:11328..11631TCONS_00040418-exon-sc0002422-1510915933:11328..11631Clytia hemisphaericaexon
TCONS_00040418-exon-sc0002422-1575043694:11328..11631TCONS_00040418-exon-sc0002422-1575043694:11328..11631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002422supercontigsc0002422:11328..11631 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.727703	0	0.826634	1.50952	1.98807	1.91882	3.59275	3.45864	5.063	1.51208	1.49098	3.22596	1.54624	0.21187	0.454738	0.840301	0.861281	0	0.41505	1.08226	0.52789	0	0	1.20181	1.07259	1.02324	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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