TCONS_00040415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040415
Unique NameTCONS_00040415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length831

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040415 ID=TCONS_00040415|Name=TCONS_00040415|organism=Clytia hemisphaerica|type=transcript|length=831bp
aagaGTTTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGTGG
AACTTGTATTGATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACTG
GCTTCTCTGGTAACCTGTGTGGAATGGTGAACGTATGCGACACATACGGA
TTACTCTGTCAAAACGGAGGTACATGTATAGCTGATGGAACTGTCGATGG
TTTCTCTTGCACATGTGCAGCTGGATATTCTGGTGCTTACTGTACTCAAT
CAGCATGTGGTGCTAACAGTTGTCAAAACGGAGGAACTTGTATTCCTGGT
GCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGAACTTCTGGTGCTCT
TTGTCAGAACTCAGTTTGCGGAGCAAATCCATGCCAGAATGGAGGATCTT
GTACACCGACAGCCGATGGCCCACAATGCACCTGTAGCACTGAATGGTCT
GGTCTAACTTGTGAGATTAACTTGGCTTGCAACATAAATCCATGTCAAAG
CGGAGGAACTTGTTCACCTTCGAGTCTCGTTGAAGATGGTTATACTTGCA
CATGTGCTGATGGATTTTCTGGTCAAACTTGTACTGAATCAAGCTGTAGC
GGGAACCCTTGTGCCACAGGAAGTACATGTGTCCCTGATGCTTCAGCCAA
TGGCTTTTCTTGCACATGTGCTGCTGGCCAATCAAATCCTCTCTGTAACg
TCGCCGATGGTTGTGGAACAGTCAGCGGAGCAAACCCATGTTTAAACGGA
GGAGATTGTTCGCTTTCAAATACTCTCTACGCTGGTTATTCTTGTCAATG
TAATGGAGGATTCTCAGGAACAATGTGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00040415-protein

>TCONS_00040415-protein ID=TCONS_00040415-protein|Name=TCONS_00040415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
KSLAENCSPTNPCSNGGTCIDAYPTGFECSCPTGFSGNLCGMVNVCDTYG
LLCQNGGTCIADGTVDGFSCTCAAGYSGAYCTQSACGANSCQNGGTCIPG
ANGDYTCQCPPGTSGALCQNSVCGANPCQNGGSCTPTADGPQCTCSTEWS
GLTCEINLACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCTESSCS
GNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGANPCLNG
GDCSLSNTLYAGYSCQCNGGFSGTMCH
Run BLAST on NCBI

transcript from alignment at sc0002420:19931..22321-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040415 ID=TCONS_00040415|Name=TCONS_00040415|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at sc0002420:19931..22321- (Clytia hemisphaerica)
AAGAGTTTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGTGG
AACTTGTATTGATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACTG
GCTTCTCTGGTAACCTGTGTGGAGTAAGTCGATATAATTCATATTTCTAA
TAATCAAGCCGAATAACAACACTCTAATGTTTGTTCGCACGCGATTGACT
ATTACCGAGTTTACGCATGTGTGTTTTTCTCCAAGGGAGACAGTAAGGCT
CTAGACTAGATCCTGACCAGCTGAGGACGACCATAAATCAGCACTTTTAA
TGCCCTCGATTTTGCAGGTCAGAAGTGCGGGTTATTTCAAATTGCTTCAG
TCACCCTACCGTCCTCAAAAGAGCAAATACATAACCTCGCTATTGATTAA
CCATAATGATCGTTACAAGGCACCGTTTCTACAAACCGTTTTCTATAAAC
TCGGGCACTGACAAGCTTATGAAAGGCCACAACACTGGGTTAAAAAAAAT
CGTGTAAAACTTTTTTGCTTGTCCAAATTTCACAATTCCTTCATATTTCT
CTCGTTGTGTTTCAGATGGTGAACGTATGCGACACATACGGATTACTCTG
TCAAAACGGAGGTACATGTATAGCTGATGGAACTGTCGATGGTTTCTCTT
GCACATGTGCAGCTGGATATTCTGGTGCTTACTGTACTGTAAGTTAATTC
TAATTTCCTTTATTAAAAGTGCGGATATTTTGATATATGTATTTCAACAG
TAAGAGTTAAAAACACGTCATATCAAAAATTGCTTCCACTATTATTTGCC
ATACCTACGAACTACTCTTCAGAACCTCTTGTAAATGGTTTTGTGGTTCA
AAGTTTCAATGTGAGTGAAAATTATGAATTACCTTTTTCTCTCTCTCAGC
AATCAGCATGTGGTGCTAACAGTTGTCAAAACGGAGGAACTTGTATTCCT
GGTGCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGAACTTCTGGTGC
TCTTTGTCAGGTAGGTTGTCTGGAAAGATTTGATGAAATTATATACTATT
CTTACTTTCACATAGTTTCAGAAATTTTTCCTTTATCAGATAGACTCAAA
ATTATCTTGGATATTATCTGACGATGTTACGTACTTCTTATCTTCTAGAA
CTCAGTTTGCGGAGCAAATCCATGCCAGAATGGAGGATCTTGTACACCGA
CAGCCGATGGCCCACAATGCACCTGTAGCACTGAATGGTCTGGTCTAACT
TGTGAGGTATGTTATTTTCACCTCTCTTCAAAAAATTATTAACGTTTGAT
AATACAACTTTATAAAATGATTAAGTACTAAAAAATTCAATCAGTGGTCC
AATAAAGGTTCTCTACCTTTTAATTGAATTAATAGACATTTAAGACAAGC
TGATGCAAAACAGATGCAAACAATAGCTGGTAGTTATTACAAAAGACGTT
AATAAAACATTTTGAAAAAATCATTTCAGATTAACTTGGCTTGCAACATA
AATCCATGTCAAAGCGGAGGAACTTGTTCACCTTCGAGTCTCGTTGAAGA
TGGTTATACTTGCACATGTGCTGATGGATTTTCTGGTCAAACTTGTACTG
TGAGTGGTTTCGATTTTCGAATGATTTTTTCTTAAAAACAATCTTTTTGA
CCACTTACAAAAACAAATTCTACCAATTTTGCTTCTCTAGAACTTGGAAC
TGTCTAAAAGAATCTTTGCTGAAATTCATTCACCAAATGGATATAGGGGT
ATCAATGTACCTCAAGAAATATTATATGCACCACAATTGACTGTGTTCAA
GTTCCAAGCATTTCAGGCAGGGTGTTAGGCGAAAGACTCTGGTCATAACT
TCATTCTCGCTAATGTTAGAATTGTTATGACTGTATTATCGATTCTTTTC
TTTCAAGGAATCAAGCTGTAGCGGGAACCCTTGTGCCACAGGAAGTACAT
GTGTCCCTGATGCTTCAGCCAATGGCTTTTCTTGCACATGTGCTGCTGGC
CAATCAAATCCTCTCTGTAACGTAAGTTTGTCTCTTACATTCAAATGAAG
ATATCAACGCCCCAAGCGAAGCTTAAAAAATATTAAATATCAGCTTTCAA
AGCAAACATGAGAGGCTTTCATAAAAGTAAACCGTATTTGCAAATCTTAG
CGAGTCAATCTCTATTATCAAGGTTTTGTATATTAGAATCTTTCTTTCTT
GAAGTCTCGATTGTCCATACAGAAACAATAAGGTTATGTACAAAAACTTT
TCACTTCAGGTCGCCGATGGTTGTGGAACAGTCAGCGGAGCAAACCCATG
TTTAAACGGAGGAGATTGTTCGCTTTCAAATACTCTCTACGCTGGTTATT
CTTGTCAATGTAATGGAGGATTCTCAGGAACAATGTGTCAT

Coding sequence (CDS) from alignment at sc0002420:19931..22321-

>TCONS_00040415 ID=TCONS_00040415|Name=TCONS_00040415|organism=Clytia hemisphaerica|type=CDS|length=5817bp|location=Sequence derived from alignment at sc0002420:19931..22321- (Clytia hemisphaerica)
GTCGCCGATGGTTGTGGAACAGTCAGCGGAGCAAACCCATGTTTAAACGG
AGGAGATTGTTCGCTTTCAAATACTCTCTACGCTGGTTATTCTTGTCAAT
GTAATGGAGGATTCTCAGGAACAATGTGTCATGAATCAAGCTGTAGCGGG
AACCCTTGTGCCACAGGAAGTACATGTGTCCCTGATGCTTCAGCCAATGG
CTTTTCTTGCACATGTGCTGCTGGCCAATCAAATCCTCTCTGTAACATTA
ACTTGGCTTGCAACATAAATCCATGTCAAAGCGGAGGAACTTGTTCACCT
TCGAGTCTCGTTGAAGATGGTTATACTTGCACATGTGCTGATGGATTTTC
TGGTCAAACTTGTACTAACTCAGTTTGCGGAGCAAATCCATGCCAGAATG
GAGGATCTTGTACACCGACAGCCGATGGCCCACAATGCACCTGTAGCACT
GAATGGTCTGGTCTAACTTGTGAGCAATCAGCATGTGGTGCTAACAGTTG
TCAAAACGGAGGAACTTGTATTCCTGGTGCCAATGGTGATTATACCTGTC
AGTGTCCCCCTGGAACTTCTGGTGCTCTTTGTCAGATGGTGAACGTATGC
GACACATACGGATTACTCTGTCAAAACGGAGGTACATGTATAGCTGATGG
AACTGTCGATGGTTTCTCTTGCACATGTGCAGCTGGATATTCTGGTGCTT
ACTGTACTAAGAGTTTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCA
AACGGTGGAACTTGTATTGATGCTTATCCAACTGGTTTCGAATGTTCCTG
TCCTACTGGCTTCTCTGGTAACCTGTGTGGAGTCGCCGATGGTTGTGGAA
CAGTCAGCGGAGCAAACCCATGTTTAAACGGAGGAGATTGTTCGCTTTCA
AATACTCTCTACGCTGGTTATTCTTGTCAATGTAATGGAGGATTCTCAGG
AACAATGTGTCATGAATCAAGCTGTAGCGGGAACCCTTGTGCCACAGGAA
GTACATGTGTCCCTGATGCTTCAGCCAATGGCTTTTCTTGCACATGTGCT
GCTGGCCAATCAAATCCTCTCTGTAACATTAACTTGGCTTGCAACATAAA
TCCATGTCAAAGCGGAGGAACTTGTTCACCTTCGAGTCTCGTTGAAGATG
GTTATACTTGCACATGTGCTGATGGATTTTCTGGTCAAACTTGTACTAAC
TCAGTTTGCGGAGCAAATCCATGCCAGAATGGAGGATCTTGTACACCGAC
AGCCGATGGCCCACAATGCACCTGTAGCACTGAATGGTCTGGTCTAACTT
GTGAGCAATCAGCATGTGGTGCTAACAGTTGTCAAAACGGAGGAACTTGT
ATTCCTGGTGCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGAACTTC
TGGTGCTCTTTGTCAGATGGTGAACGTATGCGACACATACGGATTACTCT
GTCAAAACGGAGGTACATGTATAGCTGATGGAACTGTCGATGGTTTCTCT
TGCACATGTGCAGCTGGATATTCTGGTGCTTACTGTACTAAGAGTTTAGC
AGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGTGGAACTTGTATTG
ATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACTGGCTTCTCTGGT
AACCTGTGTGGAGTCGCCGATGGTTGTGGAACAGTCAGCGGAGCAAACCC
ATGTTTAAACGGAGGAGATTGTTCGCTTTCAAATACTCTCTACGCTGGTT
ATTCTTGTCAATGTAATGGAGGATTCTCAGGAACAATGTGTCATGAATCA
AGCTGTAGCGGGAACCCTTGTGCCACAGGAAGTACATGTGTCCCTGATGC
TTCAGCCAATGGCTTTTCTTGCACATGTGCTGCTGGCCAATCAAATCCTC
TCTGTAACATTAACTTGGCTTGCAACATAAATCCATGTCAAAGCGGAGGA
ACTTGTTCACCTTCGAGTCTCGTTGAAGATGGTTATACTTGCACATGTGC
TGATGGATTTTCTGGTCAAACTTGTACTAACTCAGTTTGCGGAGCAAATC
CATGCCAGAATGGAGGATCTTGTACACCGACAGCCGATGGCCCACAATGC
ACCTGTAGCACTGAATGGTCTGGTCTAACTTGTGAGCAATCAGCATGTGG
TGCTAACAGTTGTCAAAACGGAGGAACTTGTATTCCTGGTGCCAATGGTG
ATTATACCTGTCAGTGTCCCCCTGGAACTTCTGGTGCTCTTTGTCAGATG
GTGAACGTATGCGACACATACGGATTACTCTGTCAAAACGGAGGTACATG
TATAGCTGATGGAACTGTCGATGGTTTCTCTTGCACATGTGCAGCTGGAT
ATTCTGGTGCTTACTGTACTAAGAGTTTAGCAGAAAATTGTTCGCCAACC
AACCCTTGTTCAAACGGTGGAACTTGTATTGATGCTTATCCAACTGGTTT
CGAATGTTCCTGTCCTACTGGCTTCTCTGGTAACCTGTGTGGAGTCGCCG
ATGGTTGTGGAACAGTCAGCGGAGCAAACCCATGTTTAAACGGAGGAGAT
TGTTCGCTTTCAAATACTCTCTACGCTGGTTATTCTTGTCAATGTAATGG
AGGATTCTCAGGAACAATGTGTCATGAATCAAGCTGTAGCGGGAACCCTT
GTGCCACAGGAAGTACATGTGTCCCTGATGCTTCAGCCAATGGCTTTTCT
TGCACATGTGCTGCTGGCCAATCAAATCCTCTCTGTAACATTAACTTGGC
TTGCAACATAAATCCATGTCAAAGCGGAGGAACTTGTTCACCTTCGAGTC
TCGTTGAAGATGGTTATACTTGCACATGTGCTGATGGATTTTCTGGTCAA
ACTTGTACTAACTCAGTTTGCGGAGCAAATCCATGCCAGAATGGAGGATC
TTGTACACCGACAGCCGATGGCCCACAATGCACCTGTAGCACTGAATGGT
CTGGTCTAACTTGTGAGCAATCAGCATGTGGTGCTAACAGTTGTCAAAAC
GGAGGAACTTGTATTCCTGGTGCCAATGGTGATTATACCTGTCAGTGTCC
CCCTGGAACTTCTGGTGCTCTTTGTCAGATGGTGAACGTATGCGACACAT
ACGGATTACTCTGTCAAAACGGAGGTACATGTATAGCTGATGGAACTGTC
GATGGTTTCTCTTGCACATGTGCAGCTGGATATTCTGGTGCTTACTGTAC
TAAGAGTTTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGTG
GAACTTGTATTGATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACT
GGCTTCTCTGGTAACCTGTGTGGAGTCGCCGATGGTTGTGGAACAGTCAG
CGGAGCAAACCCATGTTTAAACGGAGGAGATTGTTCGCTTTCAAATACTC
TCTACGCTGGTTATTCTTGTCAATGTAATGGAGGATTCTCAGGAACAATG
TGTCATGAATCAAGCTGTAGCGGGAACCCTTGTGCCACAGGAAGTACATG
TGTCCCTGATGCTTCAGCCAATGGCTTTTCTTGCACATGTGCTGCTGGCC
AATCAAATCCTCTCTGTAACATTAACTTGGCTTGCAACATAAATCCATGT
CAAAGCGGAGGAACTTGTTCACCTTCGAGTCTCGTTGAAGATGGTTATAC
TTGCACATGTGCTGATGGATTTTCTGGTCAAACTTGTACTAACTCAGTTT
GCGGAGCAAATCCATGCCAGAATGGAGGATCTTGTACACCGACAGCCGAT
GGCCCACAATGCACCTGTAGCACTGAATGGTCTGGTCTAACTTGTGAGCA
ATCAGCATGTGGTGCTAACAGTTGTCAAAACGGAGGAACTTGTATTCCTG
GTGCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGAACTTCTGGTGCT
CTTTGTCAGATGGTGAACGTATGCGACACATACGGATTACTCTGTCAAAA
CGGAGGTACATGTATAGCTGATGGAACTGTCGATGGTTTCTCTTGCACAT
GTGCAGCTGGATATTCTGGTGCTTACTGTACTAAGAGTTTAGCAGAAAAT
TGTTCGCCAACCAACCCTTGTTCAAACGGTGGAACTTGTATTGATGCTTA
TCCAACTGGTTTCGAATGTTCCTGTCCTACTGGCTTCTCTGGTAACCTGT
GTGGAGTCGCCGATGGTTGTGGAACAGTCAGCGGAGCAAACCCATGTTTA
AACGGAGGAGATTGTTCGCTTTCAAATACTCTCTACGCTGGTTATTCTTG
TCAATGTAATGGAGGATTCTCAGGAACAATGTGTCATGAATCAAGCTGTA
GCGGGAACCCTTGTGCCACAGGAAGTACATGTGTCCCTGATGCTTCAGCC
AATGGCTTTTCTTGCACATGTGCTGCTGGCCAATCAAATCCTCTCTGTAA
CATTAACTTGGCTTGCAACATAAATCCATGTCAAAGCGGAGGAACTTGTT
CACCTTCGAGTCTCGTTGAAGATGGTTATACTTGCACATGTGCTGATGGA
TTTTCTGGTCAAACTTGTACTAACTCAGTTTGCGGAGCAAATCCATGCCA
GAATGGAGGATCTTGTACACCGACAGCCGATGGCCCACAATGCACCTGTA
GCACTGAATGGTCTGGTCTAACTTGTGAGCAATCAGCATGTGGTGCTAAC
AGTTGTCAAAACGGAGGAACTTGTATTCCTGGTGCCAATGGTGATTATAC
CTGTCAGTGTCCCCCTGGAACTTCTGGTGCTCTTTGTCAGATGGTGAACG
TATGCGACACATACGGATTACTCTGTCAAAACGGAGGTACATGTATAGCT
GATGGAACTGTCGATGGTTTCTCTTGCACATGTGCAGCTGGATATTCTGG
TGCTTACTGTACTAAGAGTTTAGCAGAAAATTGTTCGCCAACCAACCCTT
GTTCAAACGGTGGAACTTGTATTGATGCTTATCCAACTGGTTTCGAATGT
TCCTGTCCTACTGGCTTCTCTGGTAACCTGTGTGGAGTCGCCGATGGTTG
TGGAACAGTCAGCGGAGCAAACCCATGTTTAAACGGAGGAGATTGTTCGC
TTTCAAATACTCTCTACGCTGGTTATTCTTGTCAATGTAATGGAGGATTC
TCAGGAACAATGTGTCATGAATCAAGCTGTAGCGGGAACCCTTGTGCCAC
AGGAAGTACATGTGTCCCTGATGCTTCAGCCAATGGCTTTTCTTGCACAT
GTGCTGCTGGCCAATCAAATCCTCTCTGTAACATTAACTTGGCTTGCAAC
ATAAATCCATGTCAAAGCGGAGGAACTTGTTCACCTTCGAGTCTCGTTGA
AGATGGTTATACTTGCACATGTGCTGATGGATTTTCTGGTCAAACTTGTA
CTAACTCAGTTTGCGGAGCAAATCCATGCCAGAATGGAGGATCTTGTACA
CCGACAGCCGATGGCCCACAATGCACCTGTAGCACTGAATGGTCTGGTCT
AACTTGTGAGCAATCAGCATGTGGTGCTAACAGTTGTCAAAACGGAGGAA
CTTGTATTCCTGGTGCCAATGGTGATTATACCTGTCAGTGTCCCCCTGGA
ACTTCTGGTGCTCTTTGTCAGATGGTGAACGTATGCGACACATACGGATT
ACTCTGTCAAAACGGAGGTACATGTATAGCTGATGGAACTGTCGATGGTT
TCTCTTGCACATGTGCAGCTGGATATTCTGGTGCTTACTGTACTAAGAGT
TTAGCAGAAAATTGTTCGCCAACCAACCCTTGTTCAAACGGTGGAACTTG
TATTGATGCTTATCCAACTGGTTTCGAATGTTCCTGTCCTACTGGCTTCT
CTGGTAACCTGTGTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024566XLOC_024566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040415-exon-sc0002420-1575043694:22199..22321TCONS_00040415-exon-sc0002420-1575043694:22199..22321Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:21634..21756TCONS_00040415-exon-sc0002420-1575043694:21634..21756Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:21312..21422TCONS_00040415-exon-sc0002420-1575043694:21312..21422Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:21066..21173TCONS_00040415-exon-sc0002420-1575043694:21066..21173Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:20723..20842TCONS_00040415-exon-sc0002420-1575043694:20723..20842Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:20301..20414TCONS_00040415-exon-sc0002420-1575043694:20301..20414Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1575043694:19931..20062TCONS_00040415-exon-sc0002420-1575043694:19931..20062Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:22199..22321TCONS_00040415-exon-sc0002420-1510915933:22199..22321Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:21634..21756TCONS_00040415-exon-sc0002420-1510915933:21634..21756Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:21312..21422TCONS_00040415-exon-sc0002420-1510915933:21312..21422Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:21066..21173TCONS_00040415-exon-sc0002420-1510915933:21066..21173Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:20723..20842TCONS_00040415-exon-sc0002420-1510915933:20723..20842Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:20301..20414TCONS_00040415-exon-sc0002420-1510915933:20301..20414Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1510915933:19931..20062TCONS_00040415-exon-sc0002420-1510915933:19931..20062Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:22199..22321TCONS_00040415-exon-sc0002420-1491911889:22199..22321Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:21634..21756TCONS_00040415-exon-sc0002420-1491911889:21634..21756Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:21312..21422TCONS_00040415-exon-sc0002420-1491911889:21312..21422Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:21066..21173TCONS_00040415-exon-sc0002420-1491911889:21066..21173Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:20723..20842TCONS_00040415-exon-sc0002420-1491911889:20723..20842Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:20301..20414TCONS_00040415-exon-sc0002420-1491911889:20301..20414Clytia hemisphaericaexon
TCONS_00040415-exon-sc0002420-1491911889:19931..20062TCONS_00040415-exon-sc0002420-1491911889:19931..20062Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040415-proteinTCONS_00040415-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002420supercontigsc0002420:19931..22321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.106141	0.27894	0.159575	0.348682	0.111195	0.369688	0.0837594	0.0826076	0.0667675	0.930614	0.259661	0	44.1566	53.5646	0.689237	1.41205	0.171273	0	60.1824	42.5732	0.176321	0.161395	0.494581	0.315195	0.264407	0.63573	0	0	0	0.554872
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00040415 vs. Swiss-Prot (Human)
Match: JAG2 (Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.986e-34
Identity = 107/277 (38.63%), Postives = 130/277 (46.93%), Query Frame = 1 
Query:   19 CSPTNPCSNGGTCIDAYPTGFECSCPTGFSGNLCGMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYCTQ--SACGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINLACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTC--TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGANPCLNGGDCSLSNTLYAGYSCQCNGGFSGTMC 828
            C   +PC+NGGTCI+A P  + C+CP G+SG  C       T    C NGG+C       GF C C +G+SG  C      C +N C  GGTC+   +G + C CP    GA CQ     C   PC N  SC     G  C C   W G+ C IN+      CQ GGTC    LV +GY C C  GF G+ C      C+ +PC +G  C  +  A+GF C C  G S PLC V  D C      +PC NG  C     L   Y C C   F G  C
Sbjct:  311 CGSHHPCTNGGTCINAEPDQYRCTCPDGYSGRNCEKAEHACTSN-PCANGGSCHE--VPSGFECHCPSGWSGPTCALDIDECASNPCAAGGTCVDQVDG-FECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQCQHGGTC--KDLV-NGYQCVCPRGFGGRHCELERDECASSPCHSGGLC--EDLADGFHCHCPQGFSGPLCEVDVDLC----EPSPCRNGARCY---NLEGDYYCACPDDFGGKNC 571

HSP 2 Score: 122.479 bits (306), Expect = 1.506e-30
Identity = 92/238 (38.66%), Postives = 116/238 (48.74%), Query Frame = 1 
Query:   31 NPCSNGGTCIDAYPTGFECSCPTGFSGNLCGMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYC--TQSACGANSCQNGGTCIPGANGDYTCQCPPGTSGALC---QNSVCGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCT--ESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGT 720
             PC NGGTCID     F C CP+G+ G LC   N  D     C + G C     V+ F C C  G+ G  C   +  C A +C NGGTC    +  + C CPPG  G+ C   +NS C  NPC NGG+C  +     C C   W G TC  N   CN  PC +GG C       + + C CA GF+G  C      C  +PCA G+TCV +   NG+ C+C  G++ P C    G G 
Sbjct:  643 QPCRNGGTCIDEV-DAFRCFCPSGWEGELCD-TNPNDCLPDPCHSRGRCY--DLVNDFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGD-TFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGASFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICVDGV---NWFRCECAPGFAGPDCRINIDECQSSPCAYGATCVDE--INGYRCSCPPGRAGPRCQEVIGFGR 870

HSP 3 Score: 115.546 bits (288), Expect = 3.245e-28
Identity = 98/274 (35.77%), Postives = 129/274 (47.08%), Query Frame = 1 
Query:   37 CSNGGTCIDAYPTGFECSCPTGFSGNLCGMVNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYCTQSA--CGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEI--NLACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCTESS--CSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGANPCLNGGDCSLSNTLYAGYSCQCNGGFSGTMCH 831
            C   G C+      F C C +GF+G  C   N+ D  G  C+NGGTCI +  VD F C C +G+ G  C  +   C  + C + G C    N D+ C C  G  G  C +    C A  C NGG+C  + D  +C C   W G TC +  N +C  NPC +GGTC  S      ++C C DG+ G+TCT ++  C+  PC  G  CV     N F C CA G + P C +  D C +    +PC  G  C        GY C C  G +G  C 
Sbjct:  606 CGPHGRCVSQPGGNFSCICDSGFTGTYC-HENIDDCLGQPCRNGGTCIDE--VDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRCYDLVN-DFYCACDDGWKGKTCHSREFQCDAYTCSNGGTCYDSGDTFRCACPPGWKGSTCAVAKNSSCLPNPCVNGGTCVGSGA---SFSCICRDGWEGRTCTHNTNDCNPLPCYNGGICV--DGVNWFRCECAPGFAGPDCRINIDECQS----SPCAYGATCV---DEINGYRCSCPPGRAGPRCQ 863

HSP 4 Score: 107.842 bits (268), Expect = 1.172e-25
Identity = 99/299 (33.11%), Postives = 136/299 (45.48%), Query Frame = 1 
Query:   28 TNPCSNGGTCIDAYPTGFECSCPTGFSGNLCGM-VNVCDTYGLLCQNGGTCIADGTVDG-FSCTCAAGYSGAYCTQ-------------SACGANS------------CQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL-ACNINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTC--TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGANPCLNGGDCSLSNTLYAGYSCQCNGGFSGTMC 828
            ++PC +GG C D    GF C CP GFSG LC + V++C+     C+NG  C     ++G + C C   + G  C+                CG+++            C   G C+    G+++C C  G +G  C  ++  C   PC+NGG+C    D  +C C + W G  C+ N   C  +PC S G C    LV D Y C C DG+ G+TC   E  C    C+ G TC    S + F C C  G     C VA     +   NPC+NGG C  S    A +SC C  G+ G  C
Sbjct:  504 SSPCHSGGLCED-LADGFHCHCPQGFSGPLCEVDVDLCEPSP--CRNGARCY---NLEGDYYCACPDDFGGKNCSVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDAFRCFCPSGWEGELCDTNPNDCLPDPCHSRGRC--YDLVNDFY-CACDDGWKGKTCHSREFQCDAYTCSNGGTCY--DSGDTFRCACPPGWKGSTCAVAKNSSCL--PNPCVNGGTCVGSG---ASFSCICRDGWEGRTC 786

HSP 5 Score: 99.7525 bits (247), Expect = 5.863e-23
Identity = 102/335 (30.45%), Postives = 138/335 (41.19%), Query Frame = 1 
Query:   28 TNPCSNGGTCIDAYPTGFECSCPTGFSGNLCGM-------------------------------------VNVCDTYGLLCQNGGTCIADGTVDGFSCTCAAGYSGAYCT--QSACGANSCQNGGTCIPGANGDYTCQCPPGTSGALCQNSV--CGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINL------ACNI--------NPCQSG----GTCSPS----SLVEDGYTCTCADGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGANPCLNGGDC-SLSNTLYAGYSCQCNGGFSGTMCH 831
            +NPC+ GGTC+D    GFEC CP  + G  C +                                     +NV D  G  CQ+GGTC     V+G+ C C  G+ G +C   +  C ++ C +GG C   A+G + C CP G SG LC+  V  C  +PC+NG  C        C C  ++ G  C +        AC +         P   G    G C P     S     ++C C  GF+G  C E    C G PC  G TC+ +  A  F C C +G    LC+   + C      +PC + G C  L N  Y    C C+ G+ G  CH
Sbjct:  391 SNPCAAGGTCVDQV-DGFECICPEQWVGATCQLDANECEGKPCLNAFSCKNLIGGYYCDCIPGWKGINCHINVNDCRGQ-CQHGGTC--KDLVNGYQCVCPRGFGGRHCELERDECASSPCHSGGLCEDLADG-FHCHCPQGFSGPLCEVDVDLCEPSPCRNGARCYNLEGDYYCACPDDFGGKNCSVPREPCPGGACRVIDGCGSDAGPGMPGTAASGVCGPHGRCVSQPGGNFSCICDSGFTGTYCHENIDDCLGQPCRNGGTCIDEVDA--FRCFCPSGWEGELCDTNPNDCL----PDPCHSRGRCYDLVNDFY----CACDDGWKGKTCH 710

HSP 6 Score: 78.9518 bits (193), Expect = 2.603e-16
Identity = 73/212 (34.43%), Postives = 97/212 (45.75%), Query Frame = 1 
Query:  214 CAAGYSGAYCTQSACGAN-SCQNGGTCIPGANGDYTCQCPPGTSGALCQNSVCGANPCQNGGSCTPTADGPQCTCSTEWSGLTCEINLAC--NINPCQSGGTCSPSSLVEDGYTCTCADGFSGQTCT--ESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGANPCLNGGDCSLSNTLYAGYSCQCNGGFSGTMCH 831
            C  G+ G  C ++ C    +  +GG  +PG      C+C  G  G  C    C   P    GSC       QC C T W GL C+ +L    + +PC +GGTC  +    D Y CTC DG+SG+ C   E +C+ NPCA G +C      +GF C C +G S P C +  D C +    NPC  GG C        G+ C C   + G  C 
Sbjct:  231 CMDGWMGKECKEAVCKQGCNLLHGGCTVPG-----ECRCSYGWQGRFCDE--CVPYPGCVHGSCVEPW---QCNCETNWGGLLCDKDLNYCGSHHPCTNGGTCINAE--PDQYRCTCPDGYSGRNCEKAEHACTSNPCANGGSC--HEVPSGFECHCPSGWSGPTCALDIDECAS----NPCAAGGTCV---DQVDGFECICPEQWVGATCQ 421
The following BLAST results are available for this feature:
BLAST of TCONS_00040415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JAG23.986e-3438.63Protein jagged-2 OS=Homo sapiens GN=JAG2 PE=1 SV=3[more]
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