TCONS_00040414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040414
Unique NameTCONS_00040414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040414 ID=TCONS_00040414|Name=TCONS_00040414|organism=Clytia hemisphaerica|type=transcript|length=379bp
TAGTTTCGTCACAAAGTTTTTAGTTTTGTCACATGaaatttttagtttca
tcacaGAATTTCAGTGTTTCGTCACAACTTTCCAGGACTTTTCAGTGTTT
CATCACGAAACTTTCAGTGTTTCATTATTAATATATTTCTTtatgaaact
aaaaatgaaattttctttcttgcttTTAAATACAGGCATGAAGGATCCAT
ATTTCAAAAGACGATATTTTTGCCACCAGTGATTAAGGGTGTTGATGAAA
ACGTGATTAGTATTTCCCCCCTGCGATACTCTTCGATACTCATTTCTTga
gatattgaaaaatatttcaggcctGCTTTTCAAAACGCAGTTACCAAGAT
AAGTCAAAATCCCATGGTACATGGTTTTG
Run BLAST on NCBI

transcript from alignment at sc0002419:20627..21005

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040414 ID=TCONS_00040414|Name=TCONS_00040414|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at sc0002419:20627..21005 (Clytia hemisphaerica)
CAAAACCATGTACCATGGGATTTTGACTTATCTTGGTAACTGCGTTTTGA
AAAGCaggcctgaaatatttttcaatatctcAAGAAATGAGTATCGAAGA
GTATCGCAGGGGGGAAATACTAATCACGTTTTCATCAACACCCTTAATCA
CTGGTGGCAAAAATATCGTCTTTTGAAATATGGATCCTTCATGCCTGTAT
TTAAaagcaagaaagaaaatttcatttttagtttcataAAGAAATATATT
AATAATGAAACACTGAAAGTTTCGTGATGAAACACTGAAAAGTCCTGGAA
AGTTGTGACGAAACACTGAAATTCtgtgatgaaactaaaaatttCATGTG
ACAAAACTAAAAACTTTGTGACGAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024565XLOC_024565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040414-exon-sc0002419-1491911889:20627..21005TCONS_00040414-exon-sc0002419-1491911889:20627..21005Clytia hemisphaericaexon
TCONS_00040414-exon-sc0002419-1510915933:20627..21005TCONS_00040414-exon-sc0002419-1510915933:20627..21005Clytia hemisphaericaexon
TCONS_00040414-exon-sc0002419-1575043694:20627..21005TCONS_00040414-exon-sc0002419-1575043694:20627..21005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002419supercontigsc0002419:20627..21005 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.83477	0.525369	0.708877	0.462351	0	0.444785	0.268307	0	0.527584	0.435665	0	0.138988	1.80433	1.04028	0.47401	0.763028	0.469994	0.321153	5.42375	8.2739	0.605328	0	0.239283	1.64045	0.672192	0.219466	0.308353	0.91619	0.802422	0.76634
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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