TCONS_00040411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040411
Unique NameTCONS_00040411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040411 ID=TCONS_00040411|Name=TCONS_00040411|organism=Clytia hemisphaerica|type=transcript|length=324bp
ATCAATGTCAAAGAGGGACTTCTTTCAAAGGAAAtctctcaaatcaaaaa
atcaagcaACTGCAGATCACTTTGACAGCCTTTACAGGACCTACCGAAAC
CAAATTGTCAATCTATCTAAATTAAGCAAGAAAAATTACTACAcaagttt
ttttcaaagatattccaataatatgaaaaaagtcTGGTCCGGGATCCGTG
ACATCATTtcatcaaaaactcaaaataattcCAATATCTCCATATCAATT
GATGGTCAAATTCAATCGAAGCCTGACAAAGTTGCTAAccattttaacaa
ctttttcacTTCCATTGCTGATGA
Run BLAST on NCBI

protein sequence of TCONS_00040411-protein

>TCONS_00040411-protein ID=TCONS_00040411-protein|Name=TCONS_00040411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
SMSKRDFFQRKSLKSKNQATADHFDSLYRTYRNQIVNLSKLSKKNYYTSF
FQRYSNNMKKVWSGIRDIISSKTQNNSNISISIDGQIQSKPDKVANHFNN
FFTSIAD
Run BLAST on NCBI

transcript from alignment at sc0002419:6104..6427

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040411 ID=TCONS_00040411|Name=TCONS_00040411|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0002419:6104..6427 (Clytia hemisphaerica)
TCATCAGCAATGGAAgtgaaaaagttgttaaaatggTTAGCAACTTTGTC
AGGCTTCGATTGAATTTGACCATCAATTGATATGGAGATATTGgaattat
tttgagtttttgatgaAATGATGTCACGGATCCCGGACCAgacttttttc
atattattggaatatctttgaaaaaaacttgTGTAGTAATTTTTCTTGCT
TAATTTAGATAGATTGACAATTTGGTTTCGGTAGGTCCTGTAAAGGCTGT
CAAAGTGATCTGCAGTtgcttgattttttgatttgagagaTTTCCTTTGA
AAGAAGTCCCTCTTTGACATTGAT

Coding sequence (CDS) from alignment at sc0002419:6104..6427

>TCONS_00040411 ID=TCONS_00040411|Name=TCONS_00040411|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0002419:6104..6427 (Clytia hemisphaerica)
ATCAGCAATGGAAgtgaaaaagttgttaaaatggTTAGCAACTTTGTCAG
GCTTCGATTGAATTTGACCATCAATTGATATGGAGATATTGgaattattt
tgagtttttgatgaAATGATGTCACGGATCCCGGACCAgacttttttcat
attattggaatatctttgaaaaaaacttgTGTAGTAATTTTTCTTGCTTA
ATTTAGATAGATTGACAATTTGGTTTCGGTAGGTCCTGTAAAGGCTGTCA
AAGTGATCTGCAGTtgcttgattttttgatttgagagaTTTCCTTTGAAA
GAAGTCCCTCTTTGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024562XLOC_024562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040411-proteinTCONS_00040411-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040411-exon-sc0002419-1491911889:6104..6427TCONS_00040411-exon-sc0002419-1491911889:6104..6427Clytia hemisphaericaexon
TCONS_00040411-exon-sc0002419-1510915933:6104..6427TCONS_00040411-exon-sc0002419-1510915933:6104..6427Clytia hemisphaericaexon
TCONS_00040411-exon-sc0002419-1575043694:6104..6427TCONS_00040411-exon-sc0002419-1575043694:6104..6427Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002419supercontigsc0002419:6104..6427 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.61696	0	0	0	0	0.657462	0	0	0	1.28796	0	0	0.20516	0	0.175165	0	1.38945	0.474713	0	0.343146	0	0.436437	0	0	0.331201	0	0	0.451424	0.342389	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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