|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040410 ID=TCONS_00040410|Name=TCONS_00040410|organism=Clytia hemisphaerica|type=transcript|length=438bp
TCTTGTGCAAGCATCTTCGTTGCTTTTGCCTTTGCCTGCTTGGTTTGGTT
GTCTTTGGCTAAGAtttaagaaaaagaAACAAATTGATGGAACCTGGTTC
AttgttgagatttttttctactTCGATGCCAGCTTGCTTCTTTCTTCCAT
CGACTTGTTGTTTGAATTCATCTAGAGATAGAGGATACCTTCTTGTCTTG
GATTATGACTTGCAGCAACATCGGATTCGTTGAGCATCTCAAGACTATCT
TCCGAAATTGGAATATCTTCTGAAATTGGAAGAGgataAACGGCCTCAAC
ATATCTGTTTATTCGTATGGAAAGACCTTCGTTCGTCTCAACAGTAAaca
ttttacctatgatggtctCAGCATTTTTTGATGCTATATATTAAAgctat
acaccgttggaaaggtaTTTGTGAGGAGAAAGATGGAA Run BLAST on NCBI transcript from alignment at sc0002417:17681..20346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040410 ID=TCONS_00040410|Name=TCONS_00040410|organism=Clytia hemisphaerica|type=transcript|length=2666bp|location=Sequence derived from alignment at sc0002417:17681..20346+ (Clytia hemisphaerica)
TCTTGTGCAAGCATCTTCGTTGCTTTTGCCTTTGCCTGCTTGGTTTGGTT
GTCTTTGGCTAAGAtttaagaaaaagtaatgaatgggaTGGGGATAGAGA
ATTTACCATTTNCTCAGTATTCAATGCCTACATATATTCTGATCTGAGAT
GATTTTCTCTATGAAAATATATCGGTTTGAATAGCATCAATTTTGTAACT
TTTCTTTTGAACAATGGGATGTTCCTGTTAAGTTCTGTTGGATCTTTTTA
ATTGCTTCtaaatttcatatcaggacagtgttttGCTATTGTTGATTATG
CTGAAATAAATGTGAATATGAATGTGAAAGAATTATAATAACATCTTACT
CTGAGCTTCAGTATATTCCTGGTGATTTCGGAAGGGTGGAGTTGCTTGGT
TAGGTCTGAAAGTTGCTTGGTTAGGTCTGAAAgttgtttgtttatctatt
tGTGGCTGTTGTACTAGTTTTGGTGGTGGTGTTTTAATTTGTGTCAATTC
TTGTAGTGAAATATTGAATTGGGAATGTTGATATGATGGCTGGTACTGTT
TAGGTGGTTGAAATTTCGTGTTTTGCTGTTGGTCCGCATTGGTTTTGGTT
ATTTCAAAGTCTGTGAAAATAGTTTATTTCATTAAGTTAACTTTCAacat
tttaaattgattttataTTGAAATCATTATATTCTTGTTCTCCAATTATA
TTGTACTGGTGAGCTACATAATGTAAAAAGTCTGTGTCAAACATCCAAAT
TacaccaaaacaaaaaatccgAGGGGTGCGTGCAGTATTATTTCATTCAA
ATATCAAAAGTTACCTTCAGAATCATTCATGTCATTAACTTGATAGTTAA
TGTCGTCCATGTCAACAAATTTATCTAACAAATCTCCACTTAGATTTATT
TTGATTGATGCTTCTGTAGAAAAAGAAAACTGTttcaaaaatgtgaaatt
tcaaataaGTTGTATAAAATGGCTAATGAGGTTTTCTTTGTATTAATTAA
ATATTAATTATAATATTTGAATCAATTTGAGCTATTCAGTATAGATTTAC
TTTCTAACCTCTGATAAGTTAATTATACCTTTCTTTTCCAGAATTTCTTG
TGCAAGCATCTTCGTTGCTTTTGCCTTTGCCTGCTTGGTTTGGTTGTCTT
TGGCTAAGAtttaagaaaaagtaatgaatgggaTGGGGATAGAGAATTTA
CCATTTTCTTACACAAATACTAAAATACTTGCACAGAGACTTAAGTTCTT
AATGATCATAACGTAGGAATGtacctttttgtttttgagcTGTTATGGCT
TCAACGTCAcctgttaaaaaaaattgataaaaattttcttgcCAATCCTT
CTACTTTATAAGGATCAAATTATGTGGGTGTTATCTACAAAAGGTGTTAT
CTGCGAGTTATTTTCAAATAAGTCAAAACATGTCGAaaactttcattaaa
aaatgttttaaaacttTGCTGATGAGTttaaccgcaaaatttaattccaa
aaaaaatttatcccattaaagtataaggTGCTAGCACAATTAGACATTTA
TTGTGTACTTAAAcagaaataatttcatttttatttaaaggaAACAAATT
GATGGAACCTGGTTCAttgttgagatttttttctactTCGATGCCAGCTT
GCTTCTTTCTTCCATCGACTTGTTGTTTGAATTCATCTAGAGATAGAGGT
AATGGAAGTATGTTAAACTAATACAATATTGACTGATTGGTGAGCGCTAT
TCTGGGAAATTTATCCAAGGTTAAGTAACAAGTCTGTATTGATCGAGGTG
GGCATTTCGCAGAACAGTCCGAAAAATTTGGTAGTATTGTATCTTTTAAA
CAATTCCTTCAGCTTCAATTGATTTGTCTtaattcattcaaaaaaattga
aaaaaattaccacTATTGCActtttgcttctttttctttggtttgGTTGT
CTTTCCTGAAATATACAGTTTTACTGAAATTTAGTACCAGAAATGCCTAC
AATTATCTGCAACTGATTAAAGCTAGACGAAAGTATCAAAATAGTTATAA
AGTCAATTTAATCTCCATAcatctttgaaaaactttgcttCAATTGGAAT
TAATATTAGTAAATTCCCATTGTTCAACATTAGGCCAAAATTCCACTGTA
TCATCATAGAAGAAGCCTCTTCCTGGAACTGGCATGAGAAGTCTACTTCC
TGTTCTTATACATATCTTTAAATTATTTATAGGATACCTTCTTGTCTTGG
ATTATGACTTGCAGCAACATCGGATTCGTTGAGCATCTCAAGACTATCTT
CCGAAATTGGAATATCTTCTGAAATTGGAAGAGGTATTTgtatttgattt
attgattatGAAATAAAGTGCTTATGAGACCTGGAAATTAAATTGGTTAG
GTAAAATATTTTACGGATTGTCAAGagtattttttgatatttttatccgA
TTTCGTCTTTCTGAGATTTTCAAAGCTCTTATGATaatagtttctttatt
ttttattttcaggataAACGGCCTCAACATATCTGTTTATTCGTATGGAA
AGACCTTCGTTCGTCTCAACAGTAAacattttacctatgatggtctCAGC
ATTTTTTGATGCTATATATTAAAgctatacaccgttggaaaggtaTTTGT
GAGGAGAAAGATGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040410-exon-sc0002417-1491911889:17681..17755 | TCONS_00040410-exon-sc0002417-1491911889:17681..17755 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1510915933:17681..17755 | TCONS_00040410-exon-sc0002417-1510915933:17681..17755 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1575043694:17681..17755 | TCONS_00040410-exon-sc0002417-1575043694:17681..17755 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1491911889:19271..19378 | TCONS_00040410-exon-sc0002417-1491911889:19271..19378 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1510915933:19271..19378 | TCONS_00040410-exon-sc0002417-1510915933:19271..19378 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1575043694:19271..19378 | TCONS_00040410-exon-sc0002417-1575043694:19271..19378 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1491911889:19913..20013 | TCONS_00040410-exon-sc0002417-1491911889:19913..20013 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1510915933:19913..20013 | TCONS_00040410-exon-sc0002417-1510915933:19913..20013 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1575043694:19913..20013 | TCONS_00040410-exon-sc0002417-1575043694:19913..20013 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1491911889:20193..20346 | TCONS_00040410-exon-sc0002417-1491911889:20193..20346 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1510915933:20193..20346 | TCONS_00040410-exon-sc0002417-1510915933:20193..20346 | Clytia hemisphaerica | exon |
| TCONS_00040410-exon-sc0002417-1575043694:20193..20346 | TCONS_00040410-exon-sc0002417-1575043694:20193..20346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002417 | supercontig | sc0002417:17681..20346 + |
Blast
The following BLAST results are available for this feature:
|
