TCONS_00040409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040409
Unique NameTCONS_00040409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040409 ID=TCONS_00040409|Name=TCONS_00040409|organism=Clytia hemisphaerica|type=transcript|length=630bp
gtTTGACCAACTTTGAGAATGGGACAAAATATTGGAACAGTTTGTAATAG
ACGAATACCGGCGGAAACCCGCGGACTACTGTAATATGATTCTATgctca
aaaaagttttaaattcaaaactcgCCGCCGATGGTAATAGAAGATCAGAC
TACCGCAACGTTATTCTAGGCTCAAAGAAAGTTATAACTTATCGAAAATA
GACATTTAATGCTAAACTCGAGTTCGAAGAATTTTGTTTTGCTGAATGtt
gagaaaaattatttacTGATGATAGATTTTACTTAAATTTGACACAAGAA
ATATTTAACAGTTACGACATAAATTTGATATACAGAAACATGTTATTTTG
ACAGATCTCTTGAAAAACAGTGAAATTATTCCAATGAAagccggcggcgg
cggcggtaaaATTTTCTAATGGAAATATTTTGATTACCGGTGGGTTGTCG
CAAAACACCACAGAACCCTTCGGCGGCGGTAAATTATTCTAATGAAAAGA
AGTTGGTTACCGGCGGGTTGCGGCGGAAAACACCGCGAaacccggcggcg
gcggcggtaaaATATTCtaatgaaatattttgattaaCGGCGGGTTGCCG
CAAAACACCGCGAAATACGGCGGCAGCGgc
Run BLAST on NCBI

transcript from alignment at sc0002416:4490..5119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040409 ID=TCONS_00040409|Name=TCONS_00040409|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at sc0002416:4490..5119 (Clytia hemisphaerica)
gcCGCTGCCGCCGTATTTCGCGGTGTTTTGCGGCAACCCGCCGttaatca
aaatatttcattaGAATATtttaccgccgccgccgccgggttTCGCGGTG
TTTTCCGCCGCAACCCGCCGGTAACCAACTTCTTTTCATTAGAATAATTT
ACCGCCGCCGAAGGGTTCTGTGGTGTTTTGCGACAACCCACCGGTAATCA
AAATATTTCCATTAGAAAATtttaccgccgccgccgccggctTTCATTGG
AATAATTTCACTGTTTTTCAAGAGATCTGTCAAAATAACATGTTTCTGTA
TATCAAATTTATGTCGTAACTGTTAAATATTTCTTGTGTCAAATTTAAGT
AAAATCTATCATCAgtaaataatttttctcaaCATTCAGCAAAACAAAAT
TCTTCGAACTCGAGTTTAGCATTAAATGTCTATTTTCGATAAGTTATAAC
TTTCTTTGAGCCTAGAATAACGTTGCGGTAGTCTGATCTTCTATTACCAT
CGGCGGcgagttttgaatttaaaacttttttgagcATAGAATCATATTAC
AGTAGTCCGCGGGTTTCCGCCGGTATTCGTCTATTACAAACTGTTCCAAT
ATTTTGTCCCATTCTCAAAGTTGGTCAAac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024560XLOC_024560Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040409-exon-sc0002416-1491911889:4490..5119TCONS_00040409-exon-sc0002416-1491911889:4490..5119Clytia hemisphaericaexon
TCONS_00040409-exon-sc0002416-1510915933:4490..5119TCONS_00040409-exon-sc0002416-1510915933:4490..5119Clytia hemisphaericaexon
TCONS_00040409-exon-sc0002416-1575043694:4490..5119TCONS_00040409-exon-sc0002416-1575043694:4490..5119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002416supercontigsc0002416:4490..5119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0933487	0	0	0.216685	0	0.213039	0.0879609	0	0	0	0	0.909176	0.308111	0	0.0648408	0.179162	0	0.814772	0.357675	0.0966225	0	0.180954	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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