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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040408 ID=TCONS_00040408|Name=TCONS_00040408|organism=Clytia hemisphaerica|type=transcript|length=2178bp
aaaaattttcgactttttcgcaagcataaacttacaaaattaaattgcaa
aaattttcgaaacgagaaaagttgaaaaggtCATACGGCTAAAacttctt
tattttgttttagcaACGAAGAAAGAGTTGATCGAGTGGGAGAAGACTGA
GAAAACCAAAAAAACCAACACCAAGGCATCAGCCAAAACAACCTATGCTG
AGGTAGCAAAGACACCAGTCAAACCAAAGACCAAATCAACAGCAAGTACT
AAACCAACTGTTGCGAAACCGATcatcaaaaaaacaaagaaaagattaaC
CAAGGTTGCCAAAGCAAAAGCAGCAAGGTCAAAAGACTGTGAAGTGGACA
ATAGTGGCCCTGCAGAGCCTCGTGAGATGAGTCAATCAGAAAGGGATGCA
ATCAGCAAATTCAATTTGAAGAAAGACGCAAAAATGAAGGAAGTGAATGG
GTTTATGATAAGACGAGTGCAAGTTGCAAACAGCATGGGCAACGACGGTT
TCGATCCAtccaaatttcttcaaaaaacacAACTCAGGGCAAAAACAACA
CCAAAACCCAACACTTTAGAACGTACGACACCAAAGACTGCAGAACCAAT
AAAGCCTGTCACTCCAGAACTCACTCCAGAACCATTAAAACCCGCCACTC
CAGGACCAGCAGAGCCTATCATCACTCCAGAACCTGTGAAACCAAACACT
CCAGAACAACCAGAAAAACCGAACTCTCCAGAACAACCAGAAAAACCCAA
CTCTCCAGAACAACCGAACTCTCCAGAATCAGCAAAACCCAACTCTCCAG
AATCAGCAAAACCCAACTCTCCAGAACAACCCAACTCTCCAGAATCAGCA
AAACCCAACACTCCAGAACCAGCAAAAACCAACACTCCAGAACCTTTGAA
ACCCAACACTCCAGAACCTTTGAAACCCAACACTCCAGAACAAACAATTC
ACCGTGAGCCAATCAAACCAATAACACCTGAACAAGCCACATTCCTGAGA
AACAAATCGAATACCTCCGTTGAGCACAATTGGACACTTCCTGGAGCAAT
GCCTTCCTTCAGTATTGCATCCACTCCAAACATGACATAGATTCCAAATT
GCAATTGCAACTTGGTCAAAGTGATGCAGTGGATGGAAACACGCTTTGAT
GCAATTGATAAAGCACTTATCAACTTGGAAAacactcaacaacaacaaca
acgacaacaacagcaacaacaacagcaatcGCATCAACAAAACACGAACT
ATCAGCCTTTGGACAACGACTGGGTGCCAcctttagattttgaaaacgaa
actGTCATGCCATTTCAAGAAGAACACGAAGGCGTGCAACGGCAAGCTAT
GCAGCAACCACTAGAACCTATGCGCCATCAAGATGATCAACTGCCACAAA
CCGGACTAGATGAACCAAATTATTTACAGATACAAATGATTGCTGAGCAA
CTATCCAACAGCCTCGACTCAGATGAACGCAACATCAAAGAAGCAGCTGA
ATACGGGGTCAAgcaagtgaagaaattttttagtCCTGGAGAGATAATGA
CGTGCAACATAAATGGTCGTCAAGGATACATGAAATTTGACACTAAAAGG
ATGGAGGCTATCCTGAAAGCTACGTTTCAAAAGTTCAACATTTCCAAACC
CCTGGAATACcatgtaaaaaaaatcataactgaaaaacttaaaaagtacC
GGCAGGCCAACAAGAAACACTGTGCTAGCAATTAAGGCTAATTTTTAGGT
CTTTGTAAAAAGGGTTCCCTGTAAGCAATTCAATCTTTAAGTTTCAAGAA
AAGTTGGTTATCTTATCAgattcgcgaaatattttttctaaatcatTACG
TTCATCAAATATTTTGTACATATAATACTCTACTCCAGAGAAATTTGAGG
CATCCTTCATTAAGATATTCGCTATATTCTCTTCAAAACATTTTGTCTGA
GATTGTAAAATTAGTCCAAATGATTCTTTCCCAATATTTGCTAGATTTCA
TGTTTTGTAGAGGAAATggaaaatttattcaattttgatTCTATAATTTC
TATTTTTATTCTATAACTAGATCATATATTGCTTACAAACATAATTTTTT
CAACCATTTACAGTGGGCCATTCCTGAAAATTTTTGTTACCCCTGTCGGA
CGACGTGTATTTTATAATTTTTTCTAGC Run BLAST on NCBI protein sequence of TCONS_00040408-protein >TCONS_00040408-protein ID=TCONS_00040408-protein|Name=TCONS_00040408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MSQSERDAISKFNLKKDAKMKEVNGFMIRRVQVANSMGNDGFDPSKFLQK
TQLRAKTTPKPNTLERTTPKTAEPIKPVTPELTPEPLKPATPGPAEPIIT
PEPVKPNTPEQPEKPNSPEQPEKPNSPEQPNSPESAKPNSPESAKPNSPE
QPNSPESAKPNTPEPAKTNTPEPLKPNTPEPLKPNTPEQTIHREPIKPIT
PEQATFLRNKSNTSVEHNWTLPGAMPSFSIASTPNMT Run BLAST on NCBI transcript from alignment at sc0002416:17233..21521- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040408 ID=TCONS_00040408|Name=TCONS_00040408|organism=Clytia hemisphaerica|type=transcript|length=4289bp|location=Sequence derived from alignment at sc0002416:17233..21521- (Clytia hemisphaerica)
AAAAATTTTCGACTTTTTCGCAAGCATAAACTTACAAAATTAAATTGCAA
AAATTTTCGAAACGAGAAAAGTTGAAAAGGTCATACGGCTAAAACTTCTT
TATTTTGTTTTAGCAACGAAGAAAGAGTTGATCGAGTGGGAGAAGACTGA
GAAAACCAAAAAAACCAACACCAAGGTATAACAATAATTTATTTAAGACG
TTAAGATGAGTGGACGTATACGTTGTCTTCTTTCGTTGTTTTCTTCCTCC
CAATGCACTAAAACAAGAAGGGTAGAATACATTAATTATGCCGAATCTTA
ATGCGAGACATTTGAACTTTACTGAACACCTTACCTCTCTTAAAAAGTTA
CAGCACTTTGAAGTTTAGTGATCTATAGCCAACTATGTTCTGAAAAAATT
CTTCGTGTACAGACTTGTTTTAGAATTAGAATTTTTAAATGGTCAATTAA
AGTCTGTCTCAAAATAATTTGCAGCTGAGTCAAAAATGGCTTTAACTTTT
GATATAATTCAAATCAAGTTGCGATCTTGTGCTCGTTGAAAAGATATTTT
AGAGTGGAATATTATCAAGCAAAAAAATACGGAAAAAAAGGAAAAATGAA
AATGAAAAAACTTCTTGTAGAAATGGGGTATAATTACCATTTTCACAGGA
GTTATGATCTAAGATTGAAGAATCACCCCTGTGAAAATGGTGATTATACC
CCATTTCTACAAAAAGTTGATTTTTTACTCCTTTCATTTTTATTTTTTCA
ACGAGCACGAACTCGCAACTCAATTCGAATTCTACTTTTGCCTCAGCTGC
AAATTATTTTGAGACAGAATTAAGGTCCATAAGATTACAAAAACGAGCGA
TGATACTTTTTTACTAATTTGTTGGTCCCATGTGACGTTTTCACTTTTGC
TGGCGTTTGAAAATTCAAGTTAAAATCAGAAGCTCAGATATGGCTCAAAT
GAAAGGCATTTATCCAAGAATTCCAAAAAATATCACAACATATATCTGAA
AAGCAATATTTGAGAAGCATGAATATAAATATTGATTTTCAAGTAGATGT
TTGTGATACTTTCTGGAATCTTTGGATAAAAAGTTTTCATTTGAGCCATA
TCTGAGCTTCTAATTACAACTTTCATTTTCAAGCCCCAGCAAAAGTGAAA
ACGTCACATGGGACCAACAAATTAGTAAAAAAGTTCACTCTTTTTCGTGA
TCATATGGACTTACTCTTAAGTTGCAAATAAACAGCCCCCTGCTTGTTAA
TTTTTCAAAAAAGTTCCAACCCCTGACCTTATTAGGACTCCTGTTTAATT
TCAAGTATATTTGAAATACATGTTTTTTTATAAGCAAATGTATGCCCCTT
GTCTCATGGCATGATTTTCGAAGTAGTTCATCTTTTTTTAAAAATCCTAA
AAGTATTCTTCTTATAATTACCTTTCTAATGGTCGATAACTTTCTGACAT
AGCATGAATGGGTTTTTTTTAGACATGCTGAAGTATTTTATCAAACCTTT
ACTTTCAGGCATCAGCCAAAACAACCTATGCTGAGGTAGCAAAGACACCA
GTCAAACCAAAGACCAAATCAACAGCAAGTACTAAACCAACTGTTGCGAA
ACCGATCATCAAAAAAACAAAGAAAAGATTAACCAAGGTTGCCAAAGCAA
AAGCAGCAAGGTCAAAAGACTGTGAAGTGGACAATAGTGGCCCTGCAGAG
GTAAAAACAGACAACTTACTTTTTCCAGATTAGGGACTTTCGAAATAAAG
TTTTTATTCAGCGTTTGTGCCAGCATTGAACATCAACTGCAGCAACTAAA
AAATAATACAAGTACTATTTTAAATTTTGTCAAAAAAACACCCTGGTATT
CAAAATTCTTCTGTATAATAATGTCAATAATTATCTGGTAGGTAGAAAAT
TGAAAAGAGAGCGGTAAAAGAATTTTCTTGATTTTAATTAGAACCACTTT
TCTTTGATTCAAAGAGGGCTACAGCTAAAAAAATACTGTAAATTTTACGT
TTGACACAAATCAATGTCAATTTCAAATAAAATTAAAACAGTTTCATGAT
CAGACAAGCTTAAAATTATTTACCTTTATAAGCAAGTGATTTTACTCTTC
TTATTCTTTATACGTTGGGTTGGGGGTGATTTGCAATCTTCTTAGGATCC
ATCAATACAGCTAGTAAATAAAAGAAAATACATTAAAGGAAGAGAAAGAA
ATTTTAATAGAAAATCTAATTCTGCCATGGGTATTCAAAATTAAAAAAAA
TTGTTGATTCGCCAAAATAAGTTCTAAAAAATTTTCTGGTTTGCGAGAAT
TTGAAAAAAAAATTGAATTGACTCTTCGTCAAAATTAGTTCAAAATTCAT
TTCAATTTTAAATCTGTTTTGGAAAAATTATGAAGATTCAATGATAAAAA
TTTGTCCTTTGAAATTATTTAATCAAAAAAGTTGCCCAAAAGAATAACAT
TTACAATTTTAAGTATATGCATTTCTAGCCTCGTGAGATGAGTCAATCAG
AAAGGGATGCAATCAGCAAATTCAATTTGAAGAAAGACGCAAAAATGAAG
GAAGTGAATGGGTTTATGATAAGACGAGTGCAAGTTGCAAACAGCATGGG
CAACGACGGTTTCGATCCATCCAAATTTCTTCAAAAAACACAACTCAGGG
CAAAAACAACACCAAAACCCAACACTTTAGAACGTACGACACCAAAGACT
GCAGAACCAATAAAGCCTGTCACTCCAGAACTCACTCCAGAACCATTAAA
ACCCGCCACTCCAGGACCAGCAGAGCCTATCATCACTCCAGAACCTGTGA
AACCAAACACTCCAGAACAACCAGAAAAACCGAACTCTCCAGAACAACCA
GAAAAACCCAACTCTCCAGAACAACCGAACTCTCCAGAATCAGCAAAACC
CAACTCTCCAGAATCAGCAAAACCCAACTCTCCAGAACAACCCAACTCTC
CAGAATCAGCAAAACCCAACACTCCAGAACCAGCAAAAACCAACACTCCA
GAACCTTTGAAACCCAACACTCCAGAACCTTTGAAACCCAACACTCCAGA
ACAAACAATTCACCGTGAGCCAATCAAACCAATAACACCTGAACAAGCCA
CATTCCTGAGAAACAAATCGAATACCTCCGTTGAGCACAATTGGACACTT
CCTGGAGCAATGCCTTCCTTCAGTATTGCATCCACTCCAAACATGACATA
GATTCCAAATTGCAATTGCAACTTGGTCAAAGTGATGCAGTGGATGGAAA
CACGCTTTGATGCAATTGATAAAGCACTTATCAACTTGGAAAACACTCAA
CAACAACAACAACGACAACAACAGCAACAACAACAGCAATCGCATCAACA
AAACACGAACTATCAGCCTTTGGACAACGACTGGGTGCCACCTTTAGATT
TTGAAAACGAAACTGTCATGCCATTTCAAGAAGAACACGAAGGCGTGCAA
CGGCAAGCTATGCAGCAACCACTAGAACCTATGCGCCATCAAGATGATCA
ACTGCCACAAACCGGACTAGATGAACCAAATTATTTACAGATACAAATGA
TTGCTGAGCAACTATCCAACAGCCTCGACTCAGATGAACGCAACATCAAA
GAAGCAGCTGAATACGGGGTCAAGCAAGTGAAGAAATTTTTTAGTCCTGG
AGAGATAATGACGTGCAACATAAATGGTCGTCAAGGATACATGAAATTTG
ACACTAAAAGGATGGAGGCTATCCTGAAAGCTACGTTTCAAAAGTTCAAC
ATTTCCAAACCCCTGGAATACCATGTAAAAAAAATCATAACTGAAAAACT
TAAAAAGTACCGGCAGGCCAACAAGAAACACTGTGCTAGCAATTAAGGCT
AATTTTTAGGTCTTTGTAAAAAGGGTTCCCTGTAAGCAATTCAATCTTTA
AGTTTCAAGAAAAGTTGGTTATCTTATCAGATTCGCGAAATATTTTTTCT
AAATCATTACGTTCATCAAATATTTTGTACATATAATACTCTACTCCAGA
GAAATTTGAGGCATCCTTCATTAAGATATTCGCTATATTCTCTTCAAAAC
ATTTTGTCTGAGATTGTAAAATTAGTCCAAATGATTCTTTCCCAATATTT
GCTAGATTTCATGTTTTGTAGAGGAAATGGAAAATTTATTCAATTTTGAT
TCTATAATTTCTATTTTTATTCTATAACTAGATCATATATTGCTTACAAA
CATAATTTTTTCAACCATTTACAGTGGGCCATTCCTGAAAATTTTTGTTA
CCCCTGTCGGACGACGTGTATTTTATAATTTTTTCTAGC Coding sequence (CDS) from alignment at sc0002416:17233..21521- >TCONS_00040408 ID=TCONS_00040408|Name=TCONS_00040408|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0002416:17233..21521- (Clytia hemisphaerica)
ATGAGTCAATCAGAAAGGGATGCAATCAGCAAATTCAATTTGAAGAAAGA
CGCAAAAATGAAGGAAGTGAATGGGTTTATGATAAGACGAGTGCAAGTTG
CAAACAGCATGGGCAACGACGGTTTCGATCCATCCAAATTTCTTCAAAAA
ACACAACTCAGGGCAAAAACAACACCAAAACCCAACACTTTAGAACGTAC
GACACCAAAGACTGCAGAACCAATAAAGCCTGTCACTCCAGAACTCACTC
CAGAACCATTAAAACCCGCCACTCCAGGACCAGCAGAGCCTATCATCACT
CCAGAACCTGTGAAACCAAACACTCCAGAACAACCAGAAAAACCGAACTC
TCCAGAACAACCAGAAAAACCCAACTCTCCAGAACAACCGAACTCTCCAG
AATCAGCAAAACCCAACTCTCCAGAATCAGCAAAACCCAACTCTCCAGAA
CAACCCAACTCTCCAGAATCAGCAAAACCCAACACTCCAGAACCAGCAAA
AACCAACACTCCAGAACCTTTGAAACCCAACACTCCAGAACCTTTGAAAC
CCAACACTCCAGAACAAACAATTCACCGTGAGCCAATCAAACCAATAACA
CCTGAACAAGCCACATTCCTGAGAAACAAATCGAATACCTCCGTTGAGCA
CAATTGGACACTTCCTGGAGCAATGCCTTCCTTCAGTATTGCATCCACTC
CAAACATGACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040408-exon-sc0002416-1575043694:21347..21521 | TCONS_00040408-exon-sc0002416-1575043694:21347..21521 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1575043694:19822..20013 | TCONS_00040408-exon-sc0002416-1575043694:19822..20013 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1575043694:17233..19043 | TCONS_00040408-exon-sc0002416-1575043694:17233..19043 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1510915933:21347..21521 | TCONS_00040408-exon-sc0002416-1510915933:21347..21521 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1510915933:19822..20013 | TCONS_00040408-exon-sc0002416-1510915933:19822..20013 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1510915933:17233..19043 | TCONS_00040408-exon-sc0002416-1510915933:17233..19043 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1491911889:21347..21521 | TCONS_00040408-exon-sc0002416-1491911889:21347..21521 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1491911889:19822..20013 | TCONS_00040408-exon-sc0002416-1491911889:19822..20013 | Clytia hemisphaerica | exon |
| TCONS_00040408-exon-sc0002416-1491911889:17233..19043 | TCONS_00040408-exon-sc0002416-1491911889:17233..19043 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002416 | supercontig | sc0002416:17233..21521 - |
Blast
The following BLAST results are available for this feature:
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