TCONS_00040402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040402
Unique NameTCONS_00040402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040402 ID=TCONS_00040402|Name=TCONS_00040402|organism=Clytia hemisphaerica|type=transcript|length=683bp
TTAGTATTAAAAATTCCTTAAGGTAATGAgttcaaagttcaaaatttgaa
aaaaactacccatgaaattcttttttgttatttcGTCTTTTAAATAGGTT
GTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAACCATCTTGGTGG
CCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAACAGACCAAC
AGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGACcaggttg
aaaataaaatgGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACA
ATCGAATCGCTAACTGACTGGAATATATTTCAAGTTTGTGCTGTTGGCTA
CTTCATTGGATTGAGCGTGAACCTCTGTCTTGATGGGGAAGTGGTATCAC
ACTTCACCAGCAACAGCCAAGGGATAAATATTCTAATCCAAGGGGACGAG
ATATTTGCCTTGTCCCTTACTCAAGATACCTTGCCAATAGATTGTAATCG
ACACAATCCATTCTGCTGCTCCGAAAGCGATGGAGACGAAACATTTTCTT
GCCCTAATTGCCTCCTTGACTACCATTCGGTCTGTGCCGATAGGTTTTCC
GACTGTGGTTGTGTACAAGAaggaaaagaattaaaataccGAGTAAGAAC
TGCCATAAAAGAAAAGGCGCTCCAACTAACGat
Run BLAST on NCBI

protein sequence of TCONS_00040402-protein

>TCONS_00040402-protein ID=TCONS_00040402-protein|Name=TCONS_00040402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKWSDDIKPSWWPLDVDFISPDTKDNRPTVQTLDKILHAFHDDQVENKMD
LMSEEDMPNASTIESLTDWNIFQVCAVGYFIGLSVNLCLDGEVVSHFTSN
SQGINILIQGDEIFALSLTQDTLPIDCNRHNPFCCSESDGDETFSCPNCL
LDYHSVCADRFSDCGCVQEGKELKYRVRTAIKEKALQLT
Run BLAST on NCBI

transcript from alignment at sc0002413:17070..19842-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040402 ID=TCONS_00040402|Name=TCONS_00040402|organism=Clytia hemisphaerica|type=transcript|length=2773bp|location=Sequence derived from alignment at sc0002413:17070..19842- (Clytia hemisphaerica)
TTAGTATTAAAAATTCCTTAAGGTAATGAGTTCAAAGTTCAAAATTTGAA
AAAAACTACCCATGAAATTCTTTTTTGTTATTTCGTCTTTTAAATAGGTT
GTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAACCATCTTGGTGG
CCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAACAGACCAAC
AGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGACCAGGTTG
AAAATAAAATGGTATATGATTATATCTAATTTAGTTTCCAACATACTATA
TTCTACATTAAGATATCCTGAAAGTAAATCTATTTGTGTAATTTGTGTAT
ACGAAACAGTATGAAACAAAATAGAAATTTAACTCTTCTCAAAGGACTTG
ATGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAATCGCTAACTGA
CTGGAGTAAGTTACAATTAAAAACATGGCGCATATTGATGGATTGGTTGA
GAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTCT
TTAAGGTAAGAAAGCTCTTGTTAAGGTTTATCGGCAGCTTTGAATCTGCT
GATTTCATCACAAAATTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACAAGACAAGACAAGACAAGACAAGACAAGACAAGACAAGA
CAAAAACATAACACGACATGACATGACATGAGAATACCTACCATTAGCTT
ACACAGCATTTTTTAAACAAAAAACAACTTTCCCTCTCTCCCTTCACAAA
ACTTGAGAACATTCAAATGTTACAAGATGGATTCTAATGTTAATTATGTC
AGAGCAAAAGGCGTGCTTTTGATATCATAAAAAAATAATATCTTTCAATA
TCACTTTACCCTCAAGTTGAAAATTGTGCTCGGCTGTGCCATTATTACAC
ATATTTGTAAAATGGTCTTCTTATTTTATAGATATATTTCAAGTTTGTGC
TGTTGGCTACTTCATTGGATTGAGCGTGAACCTCTGTCTTGATGGGGAAG
TGGTATCACACTTCACCAGCAACAGCCAAGGGATAAATATTCTAATCCAA
GGGGACGAGATATTTGCCTTGTCCCTTACTCAAGGTAAAAGTCCTATTTT
TTATATTGTTTACATTGCTTTCAGATAAGCTTTTTTTCGAATCGAAATTT
TTTCAGTATATGTATGGTATAACCTGATTATTGACTCTTGAACTTATTTT
CTGAACTCCAGATACCTTGCCAATAGATTGTAATCGACACAATCCATTCT
GCTGCTCCGAAAGCGATGGAGACGAAACATTTTCTTGCCCTAATTGCCTC
CTTGACTACCATTCGGTCTGTGCCGATAGGTTTTCCGACTGTGGTTGTGT
ACAAGAAGGAAAAGAATTAAAATACCGGTAAGTCTAAGTGGTCGATTTTA
CCATATTTCTCTACTATTTGATAAAAGTTTTCAGTAGTCATTTTTAGCAG
TTTATTGCTAGGAGCTTGAGATAAAAATTCTGTGTAATGGCTCCTGCCAT
CGATTTCTCAACCAATCCATCAATATGCGCCATGTTTTCAATTGTAACTT
ACACCAATGTTTTATTTTGATTTCCTTTCAGAGTAAGAACTGCCATAAAA
GAAAAGGCGCTCCAACTAACGAT

Coding sequence (CDS) from alignment at sc0002413:17070..19842-

>TCONS_00040402 ID=TCONS_00040402|Name=TCONS_00040402|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at sc0002413:17070..19842- (Clytia hemisphaerica)
AGTAAGAACTGCCATAAAAGAAAAGGCGCTCCAACTAACGATACCTTGCC
AATAGATTGTAATCGACACAATCCATTCTGCTGCTCCGAAAGCGATGGAG
ACGAAACATTTTCTTGCCCTAATTGCCTCCTTGACTACCATTCGGTCTGT
GCCGATAGGTTTTCCGACTGTGGTTGTGTACAAGAAGGAAAAGAATTAAA
ATACCGATATATTTCAAGTTTGTGCTGTTGGCTACTTCATTGGATTGAGC
GTGAACCTCTGTCTTGATGGGGAAGTGGTATCACACTTCACCAGCAACAG
CCAAGGGATAAATATTCTAATCCAAGGGGACGAGATATTTGCCTTGTCCC
TTACTCAAGGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAAT
CGAATCGCTAACTGACTGGAATGAAATGGTCTGATGACATTAAACCATCT
TGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAACAG
ACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGACC
AGGTTGAAAATAAAATGAGTAAGAACTGCCATAAAAGAAAAGGCGCTCCA
ACTAACGATACCTTGCCAATAGATTGTAATCGACACAATCCATTCTGCTG
CTCCGAAAGCGATGGAGACGAAACATTTTCTTGCCCTAATTGCCTCCTTG
ACTACCATTCGGTCTGTGCCGATAGGTTTTCCGACTGTGGTTGTGTACAA
GAAGGAAAAGAATTAAAATACCGATATATTTCAAGTTTGTGCTGTTGGCT
ACTTCATTGGATTGAGCGTGAACCTCTGTCTTGATGGGGAAGTGGTATCA
CACTTCACCAGCAACAGCCAAGGGATAAATATTCTAATCCAAGGGGACGA
GATATTTGCCTTGTCCCTTACTCAAGGACTTGATGAGTGAGGAGGATATG
CCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAATGAAATGGTCTG
ATGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTTCATATCACCT
GACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATAAGATTTTGCA
TGCATTTCATGATGACCAGGTTGAAAATAAAATGAGTAAGAACTGCCATA
AAAGAAAAGGCGCTCCAACTAACGATACCTTGCCAATAGATTGTAATCGA
CACAATCCATTCTGCTGCTCCGAAAGCGATGGAGACGAAACATTTTCTTG
CCCTAATTGCCTCCTTGACTACCATTCGGTCTGTGCCGATAGGTTTTCCG
ACTGTGGTTGTGTACAAGAAGGAAAAGAATTAAAATACCGATATATTTCA
AGTTTGTGCTGTTGGCTACTTCATTGGATTGAGCGTGAACCTCTGTCTTG
ATGGGGAAGTGGTATCACACTTCACCAGCAACAGCCAAGGGATAAATATT
CTAATCCAAGGGGACGAGATATTTGCCTTGTCCCTTACTCAAGGACTTGA
TGAGTGAGGAGGATATGCCGAATGCCTCAACAATCGAATCGCTAACTGAC
TGGAATGAAATGGTCTGATGACATTAAACCATCTTGGTGGCCCTTGGATG
TTGATTTCATATCACCTGACACCAAAGACAACAGACCAACAGTTCAAACC
CTGGATAAGATTTTGCATGCATTTCATGATGACCAGGTTGAAAATAAAAT
GAGTAAGAACTGCCATAAAAGAAAAGGCGCTCCAACTAACGATACCTTGC
CAATAGATTGTAATCGACACAATCCATTCTGCTGCTCCGAAAGCGATGGA
GACGAAACATTTTCTTGCCCTAATTGCCTCCTTGACTACCATTCGGTCTG
TGCCGATAGGTTTTCCGACTGTGGTTGTGTACAAGAAGGAAAAGAATTAA
AATACCGATATATTTCAAGTTTGTGCTGTTGGCTACTTCATTGGATTGAG
CGTGAACCTCTGTCTTGATGGGGAAGTGGTATCACACTTCACCAGCAACA
GCCAAGGGATAAATATTCTAATCCAAGGGGACGAGATATTTGCCTTGTCC
CTTACTCAAGGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAA
TCGAATCGCTAACTGACTGGAATGAAATGGTCTGATGACATTAAACCATC
TTGGTGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAACA
GACCAACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGAC
CAGGTTGAAAATAAAATGAGTAAGAACTGCCATAAAAGAAAAGGCGCTCC
AACTAACGATACCTTGCCAATAGATTGTAATCGACACAATCCATTCTGCT
GCTCCGAAAGCGATGGAGACGAAACATTTTCTTGCCCTAATTGCCTCCTT
GACTACCATTCGGTCTGTGCCGATAGGTTTTCCGACTGTGGTTGTGTACA
AGAAGGAAAAGAATTAAAATACCGATATATTTCAAGTTTGTGCTGTTGGC
TACTTCATTGGATTGAGCGTGAACCTCTGTCTTGATGGGGAAGTGGTATC
ACACTTCACCAGCAACAGCCAAGGGATAAATATTCTAATCCAAGGGGACG
AGATATTTGCCTTGTCCCTTACTCAAGGACTTGATGAGTGAGGAGGATAT
GCCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAATGAAATGGTCT
GATGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTTCATATCACC
TGACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATAAGATTTTGC
ATGCATTTCATGATGACCAGGTTGAAAATAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024553XLOC_024553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040402-exon-sc0002413-1575043694:19582..19842TCONS_00040402-exon-sc0002413-1575043694:19582..19842Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1575043694:19388..19448TCONS_00040402-exon-sc0002413-1575043694:19388..19448Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1575043694:17609..17761TCONS_00040402-exon-sc0002413-1575043694:17609..17761Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1575043694:17316..17481TCONS_00040402-exon-sc0002413-1575043694:17316..17481Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1575043694:17070..17111TCONS_00040402-exon-sc0002413-1575043694:17070..17111Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1510915933:19582..19842TCONS_00040402-exon-sc0002413-1510915933:19582..19842Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1510915933:19388..19448TCONS_00040402-exon-sc0002413-1510915933:19388..19448Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1510915933:17609..17761TCONS_00040402-exon-sc0002413-1510915933:17609..17761Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1510915933:17316..17481TCONS_00040402-exon-sc0002413-1510915933:17316..17481Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1510915933:17070..17111TCONS_00040402-exon-sc0002413-1510915933:17070..17111Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1491911889:19582..19842TCONS_00040402-exon-sc0002413-1491911889:19582..19842Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1491911889:19388..19448TCONS_00040402-exon-sc0002413-1491911889:19388..19448Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1491911889:17609..17761TCONS_00040402-exon-sc0002413-1491911889:17609..17761Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1491911889:17316..17481TCONS_00040402-exon-sc0002413-1491911889:17316..17481Clytia hemisphaericaexon
TCONS_00040402-exon-sc0002413-1491911889:17070..17111TCONS_00040402-exon-sc0002413-1491911889:17070..17111Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040402-proteinTCONS_00040402-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002413supercontigsc0002413:17070..19842 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16393	0	0.892584	0	0.521143	1.34855	0.114383	0.495476	2.39224	2.91024	3.74473	1.88647	1.24695	2.33748	0.348905	1.30082	0	1.4376	0.940001	0.892359	0.39069	0	0.606972	0.511655	3.57812	5.68581	0	0.685933	0.954131	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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