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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040400 ID=TCONS_00040400|Name=TCONS_00040400|organism=Clytia hemisphaerica|type=transcript|length=628bp
gttctaAGCAAGTATTGTACATGTTGTCGAAGCTCACAGCGATATGATGG
TTCTGAACAATGTATCTTGAACATGGGAAAATTTCTTATCCATCATGATT
TACTACGAGATTACATGCTTCATTTTCTCATTGGGAATAGCTGCACGTTA
AATGGCTATTATCAAATCCTAGCGATTTCCCAAGAAAATGGAGGAAATTC
AAGCTTCAGAAAAAGCATCAAGTACCAAGATTTTAAGGATGCCTGGTACT
CTTTCCTTGATCTATTGGATATCTCTTTTGCTGAGGGTGCTACATGTCTT
GAATGTGGTGAGCATCCAGAATGTGTGGTTTGTGACGCAACCAGCCTTGG
CcaccaaaagaaattttcggCGCTGGTTCTCAATGAGGATACCAATGAAA
CACCAACACCGAAATTTTCAGAATATCGTGACCGCTTGGCTATTCCGAGG
AAGCATAACAGAAAGAATCTGAAAAAATGGGTGTCGAAAAAACTCCAGCC
TCGGGAATTACAATCTTTTCTAAAGGAAATGGAAGCAACACATCCTGACA
TTTTTAAAGTAATGATGTGGTACGAAGATGAGCCTCTGGACAGTGTCGTC
GATATCTTCCAATGTTTGTACTCGTCNN Run BLAST on NCBI protein sequence of TCONS_00040400-protein >TCONS_00040400-protein ID=TCONS_00040400-protein|Name=TCONS_00040400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
VLSKYCTCCRSSQRYDGSEQCILNMGKFLIHHDLLRDYMLHFLIGNSCTL
NGYYQILAISQENGGNSSFRKSIKYQDFKDAWYSFLDLLDISFAEGATCL
ECGEHPECVVCDATSLGHQKKFSALVLNEDTNETPTPKFSEYRDRLAIPR
KHNRKNLKKWVSKKLQPRELQSFLKEMEATHPDIFKVMMWYEDEPLDSVV
DIFQCLYSX Run BLAST on NCBI transcript from alignment at sc0002413:12343..13598+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040400 ID=TCONS_00040400|Name=TCONS_00040400|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at sc0002413:12343..13598+ (Clytia hemisphaerica)
gttctaAGCAAGTATTGTACATGTTGTCGAAGCTCACAGCGATATGATGG
TTCTGAACAATGTATCTTGAACATGGGAAAATTTCTTATCCATCATGATT
TACTACGAGATTACATGCTTCATTTTCTCATTGGGAATAGGTGATTATTT
TTTTACGTATAATCATgttaaagtttgttttgatttgataacAAATTCGA
GATTAAACTTAGGTGTCATCATTATTTTGtatactaccttatcggggaaa
acttcgtcggagaaaattttcgtcggggaaaaattNGTAAGTGAAAAGTA
TTTTTTCGCGGAAAAAATtaggtaccttatcggggaaaacttcgtttggg
aaaagtgacgaaattttggccaagtgacgaatatttttccccgatgaaaa
ttttcgacgaagttttccccgataaggtattaatgaaaaattaatcATCC
CTTTAACTTTTAGCTGCACGTTAAATGGCTATTATCAAATCCTAGCGATT
TCCCAAGAAAATGGAGGAAATTCAAGCTTCAGAAAAAGCATCAAGTACCA
AGATTTTAAGGATGCCTGGTACTCTTTCCTTGATCTATTGGATATCTCTT
TTGCTGAGGGTGCTACATGTCTTGAATGTGGTGAGCATCCAGAATGTGTG
GTTTGTGACGCAACCAGCCTTGGCcaccaaaagaaattttcggCGCTGGT
TCTCAATGAGGATACCAATGAAACACCAACACCGAAATTTTCGTAAGTGT
ATAAAGTGTCTTTGATAAAATAATCTTCAAATGCTAAATATAAcaaaata
acgttatttgatatcattttgtcaactatttggtttaaaaaaagttccaa
aaaagTTAGTTGGACAAGCTATGTTCAATAAAAGAGTTCANctattttga
taaaataatcttcaaatgctaaatataacaaaataacgttatttgatatc
attttgtcaactatttttaaaaaaagttccaaaagaGTTAGTTGGACAAG
CTATGTTCAATAAAAGAGTTCAATAActgatttatatttatttacagAGA
ATATCGTGACCGCTTGGCTATTCCGAGGAAGCATAACAGAAAGAATCTGA
AAAAATGGGTGTCGAAAAAACTCCAGCCTCGGGAATTACAATCTTTTCTA
AAGGAAATGGAAGCAACACATCCTGACATTTTTAAAGTAATGATGTGGTA
CGAAGATGAGCCTCTGGACAGTGTCGTCGATATCTTCCAATGTTTGTACT
CGTCNN Coding sequence (CDS) from alignment at sc0002413:12343..13598+ >TCONS_00040400 ID=TCONS_00040400|Name=TCONS_00040400|organism=Clytia hemisphaerica|type=CDS|length=1881bp|location=Sequence derived from alignment at sc0002413:12343..13598+ (Clytia hemisphaerica)
gttctaAGCAAGTATTGTACATGTTGTCGAAGCTCACAGCGATATGATGG
TTCTGAACAATGTATCTTGAACATGGGAAAATTTCTTATCCATCATGATT
TACTACGAGATTACATGCTTCATTTTCTCATTGGGAATAGCTGCACGTTA
AATGGCTATTATCAAATCCTAGCGATTTCCCAAGAAAATGGAGGAAATTC
AAGCTTCAGAAAAAGCATCAAGTACCAAGATTTTAAGGATGCCTGGTACT
CTTTCCTTGATCTATTGGATATCTCTTTTGCTGAGGGTGCTACATGTCTT
GAATGTGGTGAGCATCCAGAATGTGTGGTTTGTGACGCAACCAGCCTTGG
CcaccaaaagaaattttcggCGCTGGTTCTCAATGAGGATACCAATGAAA
CACCAACACCGAAATTTTCAGAATATCGTGACCGCTTGGCTATTCCGAGG
AAGCATAACAGAAAGAATCTGAAAAAATGGGTGTCGAAAAAACTCCAGCC
TCGGGAATTACAATCTTTTCTAAAGGAAATGGAAGCAACACATCCTGACA
TTTTTAAAGTAATGATGTGGTACGAAGATGAGCCTCTGGACAGTGTCGTC
GATATCTTCCAATGTTTGTACTCGTCNgttctaAGCAAGTATTGTACATG
TTGTCGAAGCTCACAGCGATATGATGGTTCTGAACAATGTATCTTGAACA
TGGGAAAATTTCTTATCCATCATGATTTACTACGAGATTACATGCTTCAT
TTTCTCATTGGGAATAGCTGCACGTTAAATGGCTATTATCAAATCCTAGC
GATTTCCCAAGAAAATGGAGGAAATTCAAGCTTCAGAAAAAGCATCAAGT
ACCAAGATTTTAAGGATGCCTGGTACTCTTTCCTTGATCTATTGGATATC
TCTTTTGCTGAGGGTGCTACATGTCTTGAATGTGGTGAGCATCCAGAATG
TGTGGTTTGTGACGCAACCAGCCTTGGCcaccaaaagaaattttcggCGC
TGGTTCTCAATGAGGATACCAATGAAACACCAACACCGAAATTTTCAGAA
TATCGTGACCGCTTGGCTATTCCGAGGAAGCATAACAGAAAGAATCTGAA
AAAATGGGTGTCGAAAAAACTCCAGCCTCGGGAATTACAATCTTTTCTAA
AGGAAATGGAAGCAACACATCCTGACATTTTTAAAGTAATGATGTGGTAC
GAAGATGAGCCTCTGGACAGTGTCGTCGATATCTTCCAATGTTTGTACTC
GTCNgttctaAGCAAGTATTGTACATGTTGTCGAAGCTCACAGCGATATG
ATGGTTCTGAACAATGTATCTTGAACATGGGAAAATTTCTTATCCATCAT
GATTTACTACGAGATTACATGCTTCATTTTCTCATTGGGAATAGCTGCAC
GTTAAATGGCTATTATCAAATCCTAGCGATTTCCCAAGAAAATGGAGGAA
ATTCAAGCTTCAGAAAAAGCATCAAGTACCAAGATTTTAAGGATGCCTGG
TACTCTTTCCTTGATCTATTGGATATCTCTTTTGCTGAGGGTGCTACATG
TCTTGAATGTGGTGAGCATCCAGAATGTGTGGTTTGTGACGCAACCAGCC
TTGGCcaccaaaagaaattttcggCGCTGGTTCTCAATGAGGATACCAAT
GAAACACCAACACCGAAATTTTCAGAATATCGTGACCGCTTGGCTATTCC
GAGGAAGCATAACAGAAAGAATCTGAAAAAATGGGTGTCGAAAAAACTCC
AGCCTCGGGAATTACAATCTTTTCTAAAGGAAATGGAAGCAACACATCCT
GACATTTTTAAAGTAATGATGTGGTACGAAGATGAGCCTCTGGACAGTGT
CGTCGATATCTTCCAATGTTTGTACTCGTCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040400-exon-sc0002413-1491911889:12343..12482 | TCONS_00040400-exon-sc0002413-1491911889:12343..12482 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1510915933:12343..12482 | TCONS_00040400-exon-sc0002413-1510915933:12343..12482 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1575043694:12343..12482 | TCONS_00040400-exon-sc0002413-1575043694:12343..12482 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1491911889:12806..13084 | TCONS_00040400-exon-sc0002413-1491911889:12806..13084 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1510915933:12806..13084 | TCONS_00040400-exon-sc0002413-1510915933:12806..13084 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1575043694:12806..13084 | TCONS_00040400-exon-sc0002413-1575043694:12806..13084 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1491911889:13390..13598 | TCONS_00040400-exon-sc0002413-1491911889:13390..13598 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1510915933:13390..13598 | TCONS_00040400-exon-sc0002413-1510915933:13390..13598 | Clytia hemisphaerica | exon |
| TCONS_00040400-exon-sc0002413-1575043694:13390..13598 | TCONS_00040400-exon-sc0002413-1575043694:13390..13598 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002413 | supercontig | sc0002413:12343..13598 + |
Blast
The following BLAST results are available for this feature:
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